| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960999
Identifier: 157960999
GI number: 157960999
Start: 1417740
End: 1420280
Strand: Direct
Name: 157960999
Synonym: Spea_1171
Alternate gene names: NA
Gene position: 1417740-1420280 (Clockwise)
Preceding gene: 157960996
Following gene: 157961003
Centisome position: 27.4
GC content: 36.6
Gene sequence:
>2541_bases ATGGATGTTAGTAAAATAAAAAAAGAAATTTATGAGGGAATACTAAGTGGTAATGTCTCGAAATCTATTATCGATAACCT TGTTAGGCCAGACGGTTCATTTCTTTCAAAAGAATGTGAGCTTTGGGACTATAAAAAAACTTTCGAAGATACTAAGGATG CAACTCTAAAAACTCTAAAATCAATAATTAGCTTTCATAATACTTATGGGGGCTACTTAATTTTTGGTGTAGATGAGGTT GAGAAGGATACTTCTTTCGTTCTGAGTGGCGTGGAAAAGAATCTAATTGATCAGCAAAAATTGCGAGGACAGTTTGATAG ATACTTCAATCAAAGACTTGATCTCACATATGAAGAAATCGTCATTTCTTCCGATAAAGGTGATTTGATTATTGGTTTGC TTCATATCCCTAAAAGAAGTAAAAAAAACCATTCAATAGCTTCGATAGTTGATGGTGTTAACTCCAAGGGAAAAGTGATT TTAGAGAAAGATACCGTCTATATTAGAAAGATAGATGAGTGTAAAAGAGTTGTCTCCCAAGCAGATTTCGAATTTCTTGT TTCTGATAGACATTTTGACGCTGAACACGGTGTGCCAAAGAAAATAAGAAAAAATATAATTGAACACAACCTCCCCGACA AAAACTTCATTTGCCCTGATTTCATCGGGAGATTTGAAATCCTCCAAGAGCTTTGGTCTTGGCTATCTGATGACTTTAAA TATACGAATGTCTTAGCAGCTGATGGTGGTAAAGGAAAAACATCAATTGCTTATGAGTTTTCGCAACTGATCATTCAGTC TGGTACTGATCTTTTTGAACAAGTAATATGGCTTACCGCAAAAAAACAACAGTTCAAAGCTGTTTATAATCAATATGTTG GTGTTCCAGAGACACACTATAAAGATCTCGAAACTCTTCTTAAAGAGGTGTGTTTAAGAACTGGATATTTACAAGATGAA GTAAGTGAATTTACTTTGCAGCAATTGCAAAGGGCTGCAAGAGATGGATTAGCTTTGATTCCATCATTTGTTGTTGTGGA TGATATTGACTCCAATTCACCTGAAGAGCAAAAGCGTATTATGGAGATCGCTCGCTCTATTTCAAGTACATCATCTAGAG TGTTAATGACCACACGAGCCAATAATATTTACTCTAGTGATTCTTCTATATTAGTCCCAGGCTTAAGAGGTAAAGAGTAT ATAGAGCTCGTTAACACTTTATGCGATGCTATCGGTCTGCCAAATTTTAATGAGAAAAACATTGGGAAATTGAATGTAGC CTCAGAAGGCTCACCATTGTTTACGGAATCAATACTTAGGTTATGTAAGTTAGGTCTCTCGCTCGAAGGAGCTATTGAAG ATTGGTCAGGAAAGAGTGGAGATACCGTTCGCGAAGCTGCATTAAGAAAAGAAGTATCAGAGTTATCTCCAGAAGCAATA AAAATATTATTAACCATTTGCTACGTAGGTGATTTATCCCGTAGCGAACTACATCAATACACTGATTTTGAGAATTCAGA AGTTAACATTGCACTTGAACAGCTCGGAAATCTATTTCTCGTAAGTAGCATGGGATTTATTGAAGAGGAACCTCGGTTTG AAAGTACATCATCAATAAGTAAGTTAGTACTATCAATAGCAAACGAGATCGTTCCCAATTCTGAAGCATACATAAAGAGG ATTCGAGAAATTGGTGAAGGTTTAGAAGCAAATACTCGGGTTCACATTCCAGAGGTAGGGGCTGCCGTGAGGCAATGCAA TTCTCTTCTTGCAGCAGAAAGATTTAGTGATTCGAGAAATACCGTACGCGCACTTATAAAGAAGCCACGCTTTAAAGAAA ATAGTGATCTTTACTTTATTCTTGCTAAAACAGATTATGAAGACCCTTTAGTTAGTGATGAGGTTGCAAGAAAGTCTTTC GTTGAAGCGTTTATTAAAGGGCAAAGGAAGCCTGCTTTTTTTGAAATGTGGTATCAGACAGAAGTTAACAGTGGAAGTAG CCGTTCGATATTGGAAGTTTGTGAAAGTGCGCTTCGTAGTATTGGTAAATTTGATTCTCAATGGGCTGAAAGGTGTGCTG TTGCGAATTACAACCAAGCAAGTAATACTAAAAATTATGAAAACAAGGTTAGATATCTTGTTTCTTGCTACGGACAGCTA TCCAAGCTTCTGAAAATTTCAAAGAGAGGTAAGTGGGAAGAACATAAACAATTAAGTGTAAAAGTAGTTGATGCTTTATG GGATGAATCGATGAATAACTCCAAGTATGAAATAGCTGGCAGCGCAATAATAAACGCTGTTAATGGAGGAGATATTAGAA GTGTAAACTTTAACCGAATGATTGAGGTATCCCATTTTTTTGTAGATGAAAAATTGGTTTCTGAGACTGCTTTTCGTGAA CTTAGAGATAATCTGGAGTGGGCACCTCAGATTTTACGAAGTGGTGCTGGAAACAGAGAGCCGCTAGCAATAAAGCTTGA GCAAACATATAGAAATATGAAAGGGTCAATGCGTAACAAGAAACTAAAGGTAACAGCCTAG
Upstream 100 bases:
>100_bases TTTACTAAATGTGCATGTGCGTTCAGTCAAACTTTCTACGTATGCTCATTATAGATAGTTACGTGCCGAAGCATCGTTCA AAACTTATTTAGAGGCCAAT
Downstream 100 bases:
>100_bases CAGCAATTGATTTGGATGTTAGTGTATGGTTCAACACCATACACTGACTAATCCTACTATGCAGCTCCTAAGTATAAATC CAAGATTAATTGATCAAGGA
Product: putative transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MDVSKIKKEIYEGILSGNVSKSIIDNLVRPDGSFLSKECELWDYKKTFEDTKDATLKTLKSIISFHNTYGGYLIFGVDEV EKDTSFVLSGVEKNLIDQQKLRGQFDRYFNQRLDLTYEEIVISSDKGDLIIGLLHIPKRSKKNHSIASIVDGVNSKGKVI LEKDTVYIRKIDECKRVVSQADFEFLVSDRHFDAEHGVPKKIRKNIIEHNLPDKNFICPDFIGRFEILQELWSWLSDDFK YTNVLAADGGKGKTSIAYEFSQLIIQSGTDLFEQVIWLTAKKQQFKAVYNQYVGVPETHYKDLETLLKEVCLRTGYLQDE VSEFTLQQLQRAARDGLALIPSFVVVDDIDSNSPEEQKRIMEIARSISSTSSRVLMTTRANNIYSSDSSILVPGLRGKEY IELVNTLCDAIGLPNFNEKNIGKLNVASEGSPLFTESILRLCKLGLSLEGAIEDWSGKSGDTVREAALRKEVSELSPEAI KILLTICYVGDLSRSELHQYTDFENSEVNIALEQLGNLFLVSSMGFIEEEPRFESTSSISKLVLSIANEIVPNSEAYIKR IREIGEGLEANTRVHIPEVGAAVRQCNSLLAAERFSDSRNTVRALIKKPRFKENSDLYFILAKTDYEDPLVSDEVARKSF VEAFIKGQRKPAFFEMWYQTEVNSGSSRSILEVCESALRSIGKFDSQWAERCAVANYNQASNTKNYENKVRYLVSCYGQL SKLLKISKRGKWEEHKQLSVKVVDALWDESMNNSKYEIAGSAIINAVNGGDIRSVNFNRMIEVSHFFVDEKLVSETAFRE LRDNLEWAPQILRSGAGNREPLAIKLEQTYRNMKGSMRNKKLKVTA
Sequences:
>Translated_846_residues MDVSKIKKEIYEGILSGNVSKSIIDNLVRPDGSFLSKECELWDYKKTFEDTKDATLKTLKSIISFHNTYGGYLIFGVDEV EKDTSFVLSGVEKNLIDQQKLRGQFDRYFNQRLDLTYEEIVISSDKGDLIIGLLHIPKRSKKNHSIASIVDGVNSKGKVI LEKDTVYIRKIDECKRVVSQADFEFLVSDRHFDAEHGVPKKIRKNIIEHNLPDKNFICPDFIGRFEILQELWSWLSDDFK YTNVLAADGGKGKTSIAYEFSQLIIQSGTDLFEQVIWLTAKKQQFKAVYNQYVGVPETHYKDLETLLKEVCLRTGYLQDE VSEFTLQQLQRAARDGLALIPSFVVVDDIDSNSPEEQKRIMEIARSISSTSSRVLMTTRANNIYSSDSSILVPGLRGKEY IELVNTLCDAIGLPNFNEKNIGKLNVASEGSPLFTESILRLCKLGLSLEGAIEDWSGKSGDTVREAALRKEVSELSPEAI KILLTICYVGDLSRSELHQYTDFENSEVNIALEQLGNLFLVSSMGFIEEEPRFESTSSISKLVLSIANEIVPNSEAYIKR IREIGEGLEANTRVHIPEVGAAVRQCNSLLAAERFSDSRNTVRALIKKPRFKENSDLYFILAKTDYEDPLVSDEVARKSF VEAFIKGQRKPAFFEMWYQTEVNSGSSRSILEVCESALRSIGKFDSQWAERCAVANYNQASNTKNYENKVRYLVSCYGQL SKLLKISKRGKWEEHKQLSVKVVDALWDESMNNSKYEIAGSAIINAVNGGDIRSVNFNRMIEVSHFFVDEKLVSETAFRE LRDNLEWAPQILRSGAGNREPLAIKLEQTYRNMKGSMRNKKLKVTA >Mature_846_residues MDVSKIKKEIYEGILSGNVSKSIIDNLVRPDGSFLSKECELWDYKKTFEDTKDATLKTLKSIISFHNTYGGYLIFGVDEV EKDTSFVLSGVEKNLIDQQKLRGQFDRYFNQRLDLTYEEIVISSDKGDLIIGLLHIPKRSKKNHSIASIVDGVNSKGKVI LEKDTVYIRKIDECKRVVSQADFEFLVSDRHFDAEHGVPKKIRKNIIEHNLPDKNFICPDFIGRFEILQELWSWLSDDFK YTNVLAADGGKGKTSIAYEFSQLIIQSGTDLFEQVIWLTAKKQQFKAVYNQYVGVPETHYKDLETLLKEVCLRTGYLQDE VSEFTLQQLQRAARDGLALIPSFVVVDDIDSNSPEEQKRIMEIARSISSTSSRVLMTTRANNIYSSDSSILVPGLRGKEY IELVNTLCDAIGLPNFNEKNIGKLNVASEGSPLFTESILRLCKLGLSLEGAIEDWSGKSGDTVREAALRKEVSELSPEAI KILLTICYVGDLSRSELHQYTDFENSEVNIALEQLGNLFLVSSMGFIEEEPRFESTSSISKLVLSIANEIVPNSEAYIKR IREIGEGLEANTRVHIPEVGAAVRQCNSLLAAERFSDSRNTVRALIKKPRFKENSDLYFILAKTDYEDPLVSDEVARKSF VEAFIKGQRKPAFFEMWYQTEVNSGSSRSILEVCESALRSIGKFDSQWAERCAVANYNQASNTKNYENKVRYLVSCYGQL SKLLKISKRGKWEEHKQLSVKVVDALWDESMNNSKYEIAGSAIINAVNGGDIRSVNFNRMIEVSHFFVDEKLVSETAFRE LRDNLEWAPQILRSGAGNREPLAIKLEQTYRNMKGSMRNKKLKVTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95868; Mature: 95868
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVSKIKKEIYEGILSGNVSKSIIDNLVRPDGSFLSKECELWDYKKTFEDTKDATLKTLK CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH SIISFHNTYGGYLIFGVDEVEKDTSFVLSGVEKNLIDQQKLRGQFDRYFNQRLDLTYEEI HHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHE VISSDKGDLIIGLLHIPKRSKKNHSIASIVDGVNSKGKVILEKDTVYIRKIDECKRVVSQ EEECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH ADFEFLVSDRHFDAEHGVPKKIRKNIIEHNLPDKNFICPDFIGRFEILQELWSWLSDDFK CCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE YTNVLAADGGKGKTSIAYEFSQLIIQSGTDLFEQVIWLTAKKQQFKAVYNQYVGVPETHY EEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH KDLETLLKEVCLRTGYLQDEVSEFTLQQLQRAARDGLALIPSFVVVDDIDSNSPEEQKRI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCCCCHHHHHH MEIARSISSTSSRVLMTTRANNIYSSDSSILVPGLRGKEYIELVNTLCDAIGLPNFNEKN HHHHHHHHCCCCEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC IGKLNVASEGSPLFTESILRLCKLGLSLEGAIEDWSGKSGDTVREAALRKEVSELSPEAI CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHH KILLTICYVGDLSRSELHQYTDFENSEVNIALEQLGNLFLVSSMGFIEEEPRFESTSSIS HHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEHHHHCCEEEEECCCCCCCCCCCCCHHHHH KLVLSIANEIVPNSEAYIKRIREIGEGLEANTRVHIPEVGAAVRQCNSLLAAERFSDSRN HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHH TVRALIKKPRFKENSDLYFILAKTDYEDPLVSDEVARKSFVEAFIKGQRKPAFFEMWYQT HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH EVNSGSSRSILEVCESALRSIGKFDSQWAERCAVANYNQASNTKNYENKVRYLVSCYGQL CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH SKLLKISKRGKWEEHKQLSVKVVDALWDESMNNSKYEIAGSAIINAVNGGDIRSVNFNRM HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHEECCCCCEEEECHHHH IEVSHFFVDEKLVSETAFRELRDNLEWAPQILRSGAGNREPLAIKLEQTYRNMKGSMRNK EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCC KLKVTA CEEECC >Mature Secondary Structure MDVSKIKKEIYEGILSGNVSKSIIDNLVRPDGSFLSKECELWDYKKTFEDTKDATLKTLK CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH SIISFHNTYGGYLIFGVDEVEKDTSFVLSGVEKNLIDQQKLRGQFDRYFNQRLDLTYEEI HHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHE VISSDKGDLIIGLLHIPKRSKKNHSIASIVDGVNSKGKVILEKDTVYIRKIDECKRVVSQ EEECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH ADFEFLVSDRHFDAEHGVPKKIRKNIIEHNLPDKNFICPDFIGRFEILQELWSWLSDDFK CCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE YTNVLAADGGKGKTSIAYEFSQLIIQSGTDLFEQVIWLTAKKQQFKAVYNQYVGVPETHY EEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH KDLETLLKEVCLRTGYLQDEVSEFTLQQLQRAARDGLALIPSFVVVDDIDSNSPEEQKRI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCCCCHHHHHH MEIARSISSTSSRVLMTTRANNIYSSDSSILVPGLRGKEYIELVNTLCDAIGLPNFNEKN HHHHHHHHCCCCEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC IGKLNVASEGSPLFTESILRLCKLGLSLEGAIEDWSGKSGDTVREAALRKEVSELSPEAI CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHH KILLTICYVGDLSRSELHQYTDFENSEVNIALEQLGNLFLVSSMGFIEEEPRFESTSSIS HHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEHHHHCCEEEEECCCCCCCCCCCCCHHHHH KLVLSIANEIVPNSEAYIKRIREIGEGLEANTRVHIPEVGAAVRQCNSLLAAERFSDSRN HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHH TVRALIKKPRFKENSDLYFILAKTDYEDPLVSDEVARKSFVEAFIKGQRKPAFFEMWYQT HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH EVNSGSSRSILEVCESALRSIGKFDSQWAERCAVANYNQASNTKNYENKVRYLVSCYGQL CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH SKLLKISKRGKWEEHKQLSVKVVDALWDESMNNSKYEIAGSAIINAVNGGDIRSVNFNRM HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHEECCCCCEEEECHHHH IEVSHFFVDEKLVSETAFRELRDNLEWAPQILRSGAGNREPLAIKLEQTYRNMKGSMRNK EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCC KLKVTA CEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA