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The map label for this gene is ycfS [H]

Identifier: 157960797

GI number: 157960797

Start: 1179521

End: 1180432

Strand: Direct

Name: ycfS [H]

Synonym: Spea_0969

Alternate gene names: 157960797

Gene position: 1179521-1180432 (Clockwise)

Preceding gene: 157960796

Following gene: 157960800

Centisome position: 22.79

GC content: 49.12

Gene sequence:

>912_bases
ATGATGCGTACTTTGCTGTTGTTCATCTTGGCATGTTTGCCACTTACTTCGTTTGCTAATGTTTACTCAATTCCTCAGAA
CGGCAGTCGCCTTGTCGGGGAGTTGCAGCAACATGTTGTGCAGAAGGGGGATTATTTCCAAACGATCTCTAAGCAATACA
ATATCGGGATCTTGGAGTTAATGCAGTCTAACCCTGGCGTTGATCCATTTTTACCGACGCCAGGCACTCGCTTGTTGATC
CCGACTCAGATGCTACTGCCTGATGTGCCACATAAAGGTGTGGTCATCAATTTAGCCGAACTACGCCTCTATTACTTCCC
TAAGGGGGGTAAAGAGGTGCATGTGTTCCCTGTCGGTATCGGGCGTGTGGGGCGCGAAACGCCTGAGATGGTGACTCGAA
TTAAGTCGCGTATTCCAAATCCTAGTTGGACGCCACCGGCGAGCATTCGTAAAGAGCACTTAGAAGAACGTGGTGAGGTA
TTGCCACGAGTGGTGCCAGCTGGCCCTGAGAATCCTCTGGGGAAATTCGCGATTCAGCTGTCTTATGGTGACGGTAGCTA
TCTTATACATGGCACCAATAAAGATTTTGGTATCGGCATGCGCGTAAGCGCGGGCTGTATACGTTTGAACCCCGATGATA
TTGAGTGGCTGTTTGATCAGGTTAAATATGGCGATCAGGTCACCATCATTAATGAAACCGTTAAGACTTCTACAGAGCCT
GATGGTCGCCAGTTGATAGAGGTGCATTCACCACTATCGACCGCAGATGGCGGCGACAACACAGTAAGAGAGATGAAACG
CGGTGTGGTTGAGTTTATTGGCAAAGAGCAGGTGGATTACACCAAAGCTAACGACGCTCTGCTGACTCAAGCGGGGATCC
CGGTCAACATTCAGAGTCGCTCAAACGGTTAA

Upstream 100 bases:

>100_bases
GATGCACTAGAAATTGACTTCGTAATTAACGTGATGACTAGAAAATAATCTGTGCTCAGGGTAACCTTTGCTTATTGAAT
TAAACGGAAACTGAAAACTG

Downstream 100 bases:

>100_bases
GTGAGTGTCTCGTTTTGATGACTAGTCATGAAATAGATTAAAGGCGTCCATTGGGCGCTTTTTTATTATCTATAGATTGA
CTTAATTAAAGGTAATTGGC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MMRTLLLFILACLPLTSFANVYSIPQNGSRLVGELQQHVVQKGDYFQTISKQYNIGILELMQSNPGVDPFLPTPGTRLLI
PTQMLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTRIKSRIPNPSWTPPASIRKEHLEERGEV
LPRVVPAGPENPLGKFAIQLSYGDGSYLIHGTNKDFGIGMRVSAGCIRLNPDDIEWLFDQVKYGDQVTIINETVKTSTEP
DGRQLIEVHSPLSTADGGDNTVREMKRGVVEFIGKEQVDYTKANDALLTQAGIPVNIQSRSNG

Sequences:

>Translated_303_residues
MMRTLLLFILACLPLTSFANVYSIPQNGSRLVGELQQHVVQKGDYFQTISKQYNIGILELMQSNPGVDPFLPTPGTRLLI
PTQMLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTRIKSRIPNPSWTPPASIRKEHLEERGEV
LPRVVPAGPENPLGKFAIQLSYGDGSYLIHGTNKDFGIGMRVSAGCIRLNPDDIEWLFDQVKYGDQVTIINETVKTSTEP
DGRQLIEVHSPLSTADGGDNTVREMKRGVVEFIGKEQVDYTKANDALLTQAGIPVNIQSRSNG
>Mature_303_residues
MMRTLLLFILACLPLTSFANVYSIPQNGSRLVGELQQHVVQKGDYFQTISKQYNIGILELMQSNPGVDPFLPTPGTRLLI
PTQMLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTRIKSRIPNPSWTPPASIRKEHLEERGEV
LPRVVPAGPENPLGKFAIQLSYGDGSYLIHGTNKDFGIGMRVSAGCIRLNPDDIEWLFDQVKYGDQVTIINETVKTSTEP
DGRQLIEVHSPLSTADGGDNTVREMKRGVVEFIGKEQVDYTKANDALLTQAGIPVNIQSRSNG

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=284, Percent_Identity=48.2394366197183, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI1787968, Length=289, Percent_Identity=46.7128027681661, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI1788299, Length=306, Percent_Identity=46.078431372549, Blast_Score=254, Evalue=5e-69,
Organism=Escherichia coli, GI1787040, Length=305, Percent_Identity=42.6229508196721, Blast_Score=244, Evalue=7e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33512; Mature: 33512

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTLLLFILACLPLTSFANVYSIPQNGSRLVGELQQHVVQKGDYFQTISKQYNIGILEL
CHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
MQSNPGVDPFLPTPGTRLLIPTQMLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGI
HHCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECC
GRVGRETPEMVTRIKSRIPNPSWTPPASIRKEHLEERGEVLPRVVPAGPENPLGKFAIQL
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
SYGDGSYLIHGTNKDFGIGMRVSAGCIRLNPDDIEWLFDQVKYGDQVTIINETVKTSTEP
EECCCCEEEEECCCCCCCEEEEECCEEEECCHHHHHHHHHHCCCCEEEEEEHHHHCCCCC
DGRQLIEVHSPLSTADGGDNTVREMKRGVVEFIGKEQVDYTKANDALLTQAGIPVNIQSR
CCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEECCC
SNG
CCC
>Mature Secondary Structure
MMRTLLLFILACLPLTSFANVYSIPQNGSRLVGELQQHVVQKGDYFQTISKQYNIGILEL
CHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
MQSNPGVDPFLPTPGTRLLIPTQMLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGI
HHCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECC
GRVGRETPEMVTRIKSRIPNPSWTPPASIRKEHLEERGEVLPRVVPAGPENPLGKFAIQL
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
SYGDGSYLIHGTNKDFGIGMRVSAGCIRLNPDDIEWLFDQVKYGDQVTIINETVKTSTEP
EECCCCEEEEECCCCCCCEEEEECCEEEECCHHHHHHHHHHCCCCEEEEEEHHHHCCCCC
DGRQLIEVHSPLSTADGGDNTVREMKRGVVEFIGKEQVDYTKANDALLTQAGIPVNIQSR
CCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEECCC
SNG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]