| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157960746
Identifier: 157960746
GI number: 157960746
Start: 1124217
End: 1124855
Strand: Reverse
Name: 157960746
Synonym: Spea_0918
Alternate gene names: NA
Gene position: 1124855-1124217 (Counterclockwise)
Preceding gene: 157960747
Following gene: 157960744
Centisome position: 21.74
GC content: 45.38
Gene sequence:
>639_bases ATGTCAGATATCACCTATAACCAAGCTGTTTTAGAGTTCGCCATTGCGGGACTCGAAGCACTTTCAGAAGCTAGCGCTAA GAGTAGTAGCGTAAGAACACCGGCAGCTGAGAGTCATTTTCTTTGCAGCTGGATGGTCACCGCATTAAAGCAACGCACCT TTTCAAAGTTAGTTGCCGATGACTTGACCCTGTGGATCCGTCAGGGGCGTAGCATGGGTGCCGGCGCCGAACTAAAAATG CTTTTAGAGAAGATTAAGGCGCAATATAGCTACATTAGCGACAAGCAAGCAGGCTTAGGTCAATCCCTTAACGCCATGCT AACTGAGCTTGAAGGCCAAGAGTGGATAGTTATCACCGACCAAGAGGTGACTAAAAAGCTAAAACTCGATAGCGATGGCT GTAATAGCCTAGTTATTTCTGATGAGCAATACAGTCAGCGCATTGAAGGGGATGAGATTATTAAACCTATCACCCTTTAT GTTCGTGCCGATGAAACTGAGTTCGCTCAAATTGCTTATCGCCACGATTTGCTGCTAAGCCCTGGTAATAAGAAGAGTTC TTTGATTAAACATCACAAAGCCTATCAAGTCTGGCCCAAGAACCTACAACCTGCACTAACGATACTGCAAGCACTCTAA
Upstream 100 bases:
>100_bases TAGCGTTTGATATTGGAAACACAAGTTAGTTTTATACTTATCCCCCCATTAGGTATAATCCCTTGCCGTCTCTTTTATCA CTTCACACGGCGGAGAATTC
Downstream 100 bases:
>100_bases GCAGAACAGGATTTAAGTGTCAATCAAACATAAAAAGGCCTGCTGATGCAGGCCTTTTTGCTCTAGTTTAACTGAGCTTA AAAATTAAAACGTTACGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MSDITYNQAVLEFAIAGLEALSEASAKSSSVRTPAAESHFLCSWMVTALKQRTFSKLVADDLTLWIRQGRSMGAGAELKM LLEKIKAQYSYISDKQAGLGQSLNAMLTELEGQEWIVITDQEVTKKLKLDSDGCNSLVISDEQYSQRIEGDEIIKPITLY VRADETEFAQIAYRHDLLLSPGNKKSSLIKHHKAYQVWPKNLQPALTILQAL
Sequences:
>Translated_212_residues MSDITYNQAVLEFAIAGLEALSEASAKSSSVRTPAAESHFLCSWMVTALKQRTFSKLVADDLTLWIRQGRSMGAGAELKM LLEKIKAQYSYISDKQAGLGQSLNAMLTELEGQEWIVITDQEVTKKLKLDSDGCNSLVISDEQYSQRIEGDEIIKPITLY VRADETEFAQIAYRHDLLLSPGNKKSSLIKHHKAYQVWPKNLQPALTILQAL >Mature_211_residues SDITYNQAVLEFAIAGLEALSEASAKSSSVRTPAAESHFLCSWMVTALKQRTFSKLVADDLTLWIRQGRSMGAGAELKML LEKIKAQYSYISDKQAGLGQSLNAMLTELEGQEWIVITDQEVTKKLKLDSDGCNSLVISDEQYSQRIEGDEIIKPITLYV RADETEFAQIAYRHDLLLSPGNKKSSLIKHHKAYQVWPKNLQPALTILQAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23663; Mature: 23532
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDITYNQAVLEFAIAGLEALSEASAKSSSVRTPAAESHFLCSWMVTALKQRTFSKLVAD CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH DLTLWIRQGRSMGAGAELKMLLEKIKAQYSYISDKQAGLGQSLNAMLTELEGQEWIVITD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC QEVTKKLKLDSDGCNSLVISDEQYSQRIEGDEIIKPITLYVRADETEFAQIAYRHDLLLS HHHHHHHCCCCCCCCEEEECCHHHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHEEEC PGNKKSSLIKHHKAYQVWPKNLQPALTILQAL CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHC >Mature Secondary Structure SDITYNQAVLEFAIAGLEALSEASAKSSSVRTPAAESHFLCSWMVTALKQRTFSKLVAD CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH DLTLWIRQGRSMGAGAELKMLLEKIKAQYSYISDKQAGLGQSLNAMLTELEGQEWIVITD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC QEVTKKLKLDSDGCNSLVISDEQYSQRIEGDEIIKPITLYVRADETEFAQIAYRHDLLLS HHHHHHHCCCCCCCCEEEECCHHHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHEEEC PGNKKSSLIKHHKAYQVWPKNLQPALTILQAL CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA