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The map label for this gene is ybaO [H]

Identifier: 157960636

GI number: 157960636

Start: 1002397

End: 1002876

Strand: Reverse

Name: ybaO [H]

Synonym: Spea_0808

Alternate gene names: 157960636

Gene position: 1002876-1002397 (Counterclockwise)

Preceding gene: 157960641

Following gene: 157960631

Centisome position: 19.38

GC content: 44.17

Gene sequence:

>480_bases
GTGGTTGAAAAAGTAAAACTAGATAAAGTTGACCGACAGTTGCTCACCATGCTGCAGCACGATGTGACCTTATCGCTTAA
CGAGTTAGCTAAAGCCGTTAATTTAACAACCACCCCCTGCTGGAAACGCCTAAAGCGTTTAGAAGAAGAAGGCGTGATCA
ACAAGCGGGTAGCCCTACTCGATCCCAGTAAAATAGGCGTCGATTTCACCGCATTTGTGCAGGTTAAGACCTGTGATCAC
TCCCATGCTTGGTATGAGACATTTATTGAAGCTATTTATGCCATGCCTGAAGTGATGGAATTTTACCGCATGGCTGGGGA
ATATGATTATATGATGCGGGTACAAGTTGAAGATATGGCTGCATTTGATCACTTTTATAAACGCTTGGTCAATCAAGTGG
CTGGGTTAACCAATGTTACGTCCACCTTTGCGATGGAGTCATTGAAATTCAGCACGGTGTTGCCATTAAAACCTGCGTAG

Upstream 100 bases:

>100_bases
AAGAGAAGGATTTTCTACTAGAATGCAGTCGAGAGTTATGCAGACGCTTAAATAAGCAAAAACAGATAATCAATAGATAA
TCTCTGTAAGGAAGAACCTT

Downstream 100 bases:

>100_bases
TTAACGCTCATCGCCTCCCCGTTTGTGTAAACCTAGTAAAGAATCCACCTTCTTAAGAAGGTGGCTTTGCCCATGTGTTA
CAAAGCAGACTCCCTAAAAG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MVEKVKLDKVDRQLLTMLQHDVTLSLNELAKAVNLTTTPCWKRLKRLEEEGVINKRVALLDPSKIGVDFTAFVQVKTCDH
SHAWYETFIEAIYAMPEVMEFYRMAGEYDYMMRVQVEDMAAFDHFYKRLVNQVAGLTNVTSTFAMESLKFSTVLPLKPA

Sequences:

>Translated_159_residues
MVEKVKLDKVDRQLLTMLQHDVTLSLNELAKAVNLTTTPCWKRLKRLEEEGVINKRVALLDPSKIGVDFTAFVQVKTCDH
SHAWYETFIEAIYAMPEVMEFYRMAGEYDYMMRVQVEDMAAFDHFYKRLVNQVAGLTNVTSTFAMESLKFSTVLPLKPA
>Mature_159_residues
MVEKVKLDKVDRQLLTMLQHDVTLSLNELAKAVNLTTTPCWKRLKRLEEEGVINKRVALLDPSKIGVDFTAFVQVKTCDH
SHAWYETFIEAIYAMPEVMEFYRMAGEYDYMMRVQVEDMAAFDHFYKRLVNQVAGLTNVTSTFAMESLKFSTVLPLKPA

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=63.5761589403974, Blast_Score=211, Evalue=1e-56,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=31.7880794701987, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18346; Mature: 18346

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKVKLDKVDRQLLTMLQHDVTLSLNELAKAVNLTTTPCWKRLKRLEEEGVINKRVALL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE
DPSKIGVDFTAFVQVKTCDHSHAWYETFIEAIYAMPEVMEFYRMAGEYDYMMRVQVEDMA
CCCHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
AFDHFYKRLVNQVAGLTNVTSTFAMESLKFSTVLPLKPA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MVEKVKLDKVDRQLLTMLQHDVTLSLNELAKAVNLTTTPCWKRLKRLEEEGVINKRVALL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE
DPSKIGVDFTAFVQVKTCDHSHAWYETFIEAIYAMPEVMEFYRMAGEYDYMMRVQVEDMA
CCCHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
AFDHFYKRLVNQVAGLTNVTSTFAMESLKFSTVLPLKPA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]