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The map label for this gene is sotB [H]

Identifier: 157960535

GI number: 157960535

Start: 869807

End: 870991

Strand: Reverse

Name: sotB [H]

Synonym: Spea_0707

Alternate gene names: 157960535

Gene position: 870991-869807 (Counterclockwise)

Preceding gene: 157960536

Following gene: 157960531

Centisome position: 16.83

GC content: 51.14

Gene sequence:

>1185_bases
ATGCTAATCGCAATGCAACAGCGCCTTATCGCCTGGGCTCCGGTGCTTTTACTGGCGCTCACCGCCTTTGTTTTTGTCTC
CACTGAATTTGTGCCTGTGGGGCTCTTAGCCGCCCTAGGCCAAAGCTTTAACATGAGCGCGGTTGCAATCGGTCCCATGT
TGACGGTTTATGCCGCCGTGGTCGCGCTTGCATCCTTGCCAGCAGTGTTGCTGTTTGCCCGCTTCGAGCGTAAGCAGTTA
CTGCTAGGCTTAATGTCCGTTTTCATTATCAGTCATGGTATTTGCGTCTGGGCGCCGACCTATGAAATCTTGCTCACGGG
CCGCACTGGCATAGCATTAACTCACGCACTATTTTGGGCAATCGCTCCAGCACTCGTGGTGCGCTTAGCTCCAGACGGCC
AAGGCGCTAAAGCCTTAAGTATCTTTGCTACTGGCTGCGTACTGGCTCTTGTGCTTGGTATTCCTTTAGGGCGGGTGATA
GGTCAGCTTGTTGGATGGCGCAGTATCTTCGCCATCATAGGTTTACTCACCTTAGCCATGATGTTGCTGCTGTGGCGCGG
TCTACCTAATCTGCCCGCAACCCATGGCGGTAGCTGGCGTAGCCTACCCTCAATAGCACGTAATAAGGCTCTGCTATGGT
TATATCTACTAACCATGACACTCGTGACGGCACACTACAGTGTTTACACTTATTTGGAGCCGTTACTGCAAGAACACTTT
GGCTACTCGGCGAATATCACCACCATGATTCTGCTAATCTTTGGCGCTGCAGGTTTAATCGGTAGTGGGCTCTTTAGTCG
CTATCAAGGCAAATATGCTCAACAACTATTGATCATAGCTATCGCCATTTTAGGCTGTTGCATGGCGATGCTGCCTTTTG
TCGCTAGTAATATAGGGTTATTGCTGCCGCTATGTATCTTATGGGGCACGGGCATGATGTTGATGTGTCTATCTTTGCAG
TCTAAAGCCTTAAAACTGGCGCCAGAAGCGACCGACGTTGCCATGGCTATCTACTCGGGCTTATTTAATGTGGGGATTGG
TAGTGGCGCCCTGCTTGGCAGTATCATAGCCGCGCACTATGGCGTGATTCAAAATGGTAACTGGGCAGCGCTGTTAATTG
TCCTCGCCTTGATGCCGCTGTTCTTCCTACTACGGGCTCGCCGAGCTGCACTGGCAGTTCACTAA

Upstream 100 bases:

>100_bases
CCACCTTGCTCACAAATCAAACATTTCAAATCTTAACAATCACTTCCTGTCTCGCCAAAAATTCGAATTCAGCGTAGACT
TGCCGCCCTTTTGATTTTGG

Downstream 100 bases:

>100_bases
TACCATTGAGCCTAGTCACCCTGTGGCCATTTTATAAGTCGCTATGTATTAAGCTATGTTGGCTGCGAAGCTTCTCTTTA
TATTAAGAATTTCGCAGCTA

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MLIAMQQRLIAWAPVLLLALTAFVFVSTEFVPVGLLAALGQSFNMSAVAIGPMLTVYAAVVALASLPAVLLFARFERKQL
LLGLMSVFIISHGICVWAPTYEILLTGRTGIALTHALFWAIAPALVVRLAPDGQGAKALSIFATGCVLALVLGIPLGRVI
GQLVGWRSIFAIIGLLTLAMMLLLWRGLPNLPATHGGSWRSLPSIARNKALLWLYLLTMTLVTAHYSVYTYLEPLLQEHF
GYSANITTMILLIFGAAGLIGSGLFSRYQGKYAQQLLIIAIAILGCCMAMLPFVASNIGLLLPLCILWGTGMMLMCLSLQ
SKALKLAPEATDVAMAIYSGLFNVGIGSGALLGSIIAAHYGVIQNGNWAALLIVLALMPLFFLLRARRAALAVH

Sequences:

>Translated_394_residues
MLIAMQQRLIAWAPVLLLALTAFVFVSTEFVPVGLLAALGQSFNMSAVAIGPMLTVYAAVVALASLPAVLLFARFERKQL
LLGLMSVFIISHGICVWAPTYEILLTGRTGIALTHALFWAIAPALVVRLAPDGQGAKALSIFATGCVLALVLGIPLGRVI
GQLVGWRSIFAIIGLLTLAMMLLLWRGLPNLPATHGGSWRSLPSIARNKALLWLYLLTMTLVTAHYSVYTYLEPLLQEHF
GYSANITTMILLIFGAAGLIGSGLFSRYQGKYAQQLLIIAIAILGCCMAMLPFVASNIGLLLPLCILWGTGMMLMCLSLQ
SKALKLAPEATDVAMAIYSGLFNVGIGSGALLGSIIAAHYGVIQNGNWAALLIVLALMPLFFLLRARRAALAVH
>Mature_394_residues
MLIAMQQRLIAWAPVLLLALTAFVFVSTEFVPVGLLAALGQSFNMSAVAIGPMLTVYAAVVALASLPAVLLFARFERKQL
LLGLMSVFIISHGICVWAPTYEILLTGRTGIALTHALFWAIAPALVVRLAPDGQGAKALSIFATGCVLALVLGIPLGRVI
GQLVGWRSIFAIIGLLTLAMMLLLWRGLPNLPATHGGSWRSLPSIARNKALLWLYLLTMTLVTAHYSVYTYLEPLLQEHF
GYSANITTMILLIFGAAGLIGSGLFSRYQGKYAQQLLIIAIAILGCCMAMLPFVASNIGLLLPLCILWGTGMMLMCLSLQ
SKALKLAPEATDVAMAIYSGLFNVGIGSGALLGSIIAAHYGVIQNGNWAALLIVLALMPLFFLLRARRAALAVH

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=355, Percent_Identity=48.4507042253521, Blast_Score=284, Evalue=6e-78,
Organism=Escherichia coli, GI1787947, Length=337, Percent_Identity=26.7062314540059, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693198, Length=298, Percent_Identity=25.8389261744966, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786595, Length=260, Percent_Identity=26.1538461538462, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42101; Mature: 42101

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAMQQRLIAWAPVLLLALTAFVFVSTEFVPVGLLAALGQSFNMSAVAIGPMLTVYAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VALASLPAVLLFARFERKQLLLGLMSVFIISHGICVWAPTYEILLTGRTGIALTHALFWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHHHHHHH
IAPALVVRLAPDGQGAKALSIFATGCVLALVLGIPLGRVIGQLVGWRSIFAIIGLLTLAM
HHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
MLLLWRGLPNLPATHGGSWRSLPSIARNKALLWLYLLTMTLVTAHYSVYTYLEPLLQEHF
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYSANITTMILLIFGAAGLIGSGLFSRYQGKYAQQLLIIAIAILGCCMAMLPFVASNIGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPLCILWGTGMMLMCLSLQSKALKLAPEATDVAMAIYSGLFNVGIGSGALLGSIIAAHY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GVIQNGNWAALLIVLALMPLFFLLRARRAALAVH
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLIAMQQRLIAWAPVLLLALTAFVFVSTEFVPVGLLAALGQSFNMSAVAIGPMLTVYAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VALASLPAVLLFARFERKQLLLGLMSVFIISHGICVWAPTYEILLTGRTGIALTHALFWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHHHHHHH
IAPALVVRLAPDGQGAKALSIFATGCVLALVLGIPLGRVIGQLVGWRSIFAIIGLLTLAM
HHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
MLLLWRGLPNLPATHGGSWRSLPSIARNKALLWLYLLTMTLVTAHYSVYTYLEPLLQEHF
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYSANITTMILLIFGAAGLIGSGLFSRYQGKYAQQLLIIAIAILGCCMAMLPFVASNIGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPLCILWGTGMMLMCLSLQSKALKLAPEATDVAMAIYSGLFNVGIGSGALLGSIIAAHY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GVIQNGNWAALLIVLALMPLFFLLRARRAALAVH
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA