| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
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The map label for this gene is rho [H]
Identifier: 157825820
GI number: 157825820
Start: 680355
End: 681731
Strand: Direct
Name: rho [H]
Synonym: A1C_03775
Alternate gene names: 157825820
Gene position: 680355-681731 (Clockwise)
Preceding gene: 157825819
Following gene: 157825821
Centisome position: 55.27
GC content: 34.86
Gene sequence:
>1377_bases ATGAACACAACTAATAAAGAATCTACAGAAGAACTTAACAATATCGGATCCAATAACAGTCATAATAATTTTACAGAGAA CGGTAATGTTATTAATTTAAAACAATTAAAACGTAAATTACCTGAGGAACTACAAGCTCAAGCAGAAGCATTAAAAATTG AAAATATTAATTCATTACTTAAACAAGAATTAGTTTTTGCAATTTTACAAAAATCTGTAGAGCAGGGAGGTTTAATAGTG GGAGAAGGGGTACTTGAAGTACTACCTGACGGATTTGGTTTTTTACGTTCGCCAGAAGTAAATTATTTAGCAGGTCCTGA TGATATTTATATTTCTCCTAGTCAGATTCGTCGCTTTGGTCTGCGTACTGGTGATACTGTAGAAGGTCAGATCAGAGCTC CAAAAGCCGGAGAACGTTATTTTGCTTTGCTGAAAGTTAATAGAGTAAATTTTGAAGACCCTTCTAAAGCTTATCATCGT GTTCATTTTGATAATTTAACTCCATTATATCCTGATGAAAAATTAGGATTAGAACTTGAAAATAATAGTAAAGATAGTAA GGATTTTAGTACACGAGTTATTGAACTTGTTGCACCCATGGGTAAAGGACAACGTGCATTAATAGTAGCACCACCTCGTA CAGGTAAAACCGTATTATTACAAAATATAGCACATGCAATTACAACCAATAATCCGGAAGTATTTTTAATAGTACTGTTA ATAGATGAAAGACCTGAAGAAGTAACCGATATGCAACGTTCCGTGCGTGGAGAGGTTGTTAGCTCTACTTTCGATGAACC AGCAAGTAGGCACGTGCAGCTTGCAGAAATGGTTATCGAAAAAGCAAAACGTTTAGTAGAACATAAAAAAGATGTAGTAA TTTTAGTAGATGCGATAACACGTTTAGCTCGTGCTTATAATACCGTAGTGCCGTCATCAGGTAAAGTATTAACGGGCGGT GTTGATGCTAATGCACTACAAAGACCGAAAAGATTTTTTGGAGCAGCACGAAATATCGAAAATGGCGGTTCGCTTACTAT AATAGGTACGGCTTTAATTGAAACCGGTTCTCGTATGGATGAGGTAATTTTTGAGGAGTTTAAAGGTACAGGTAATTCCG AGATAGTTCTAGATCGTAAGATTGCTGATAAACGTATTTATCCGGCTATTGATATAACGAGATCAGGAACTAGAAAAGAA GATTTATTAGTAGATAAAATAATATTAAATAAAATGTGGGTTCTGCGCCGTATTATCGACCCAATGGGTAGCAGTGAAGC AATGGAATTTTTACTCAAAAAACTTAAAAATACTAAAACCAATAATGAATTTTTTGAGATGATGAAGAGTCCTGAACGCC CTAAGAATGGTTTGTAA
Upstream 100 bases:
>100_bases AAAATCTAATTTGATTCCTAATTTTAAATAAGTATATTACTTACCTTTAAACTTAATTGCTAACTCAACTTTTCAATTAT AATCTATTAATAATAAGATA
Downstream 100 bases:
>100_bases AAGAAGACAAATAAAATCTCGTTTGTTAGTTTGGAAACTAGCAGCTATTATTTTAATTTCTATCATATTCTTACTAGTTG GTAAAGATTTTGCTCCAAAA
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MNTTNKESTEELNNIGSNNSHNNFTENGNVINLKQLKRKLPEELQAQAEALKIENINSLLKQELVFAILQKSVEQGGLIV GEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDPSKAYHR VHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLL IDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGG VDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKE DLLVDKIILNKMWVLRRIIDPMGSSEAMEFLLKKLKNTKTNNEFFEMMKSPERPKNGL
Sequences:
>Translated_458_residues MNTTNKESTEELNNIGSNNSHNNFTENGNVINLKQLKRKLPEELQAQAEALKIENINSLLKQELVFAILQKSVEQGGLIV GEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDPSKAYHR VHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLL IDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGG VDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKE DLLVDKIILNKMWVLRRIIDPMGSSEAMEFLLKKLKNTKTNNEFFEMMKSPERPKNGL >Mature_458_residues MNTTNKESTEELNNIGSNNSHNNFTENGNVINLKQLKRKLPEELQAQAEALKIENINSLLKQELVFAILQKSVEQGGLIV GEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDPSKAYHR VHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLL IDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGG VDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKE DLLVDKIILNKMWVLRRIIDPMGSSEAMEFLLKKLKNTKTNNEFFEMMKSPERPKNGL
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=419, Percent_Identity=67.0644391408115, Blast_Score=582, Evalue=1e-167,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 51214; Mature: 51214
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTNKESTEELNNIGSNNSHNNFTENGNVINLKQLKRKLPEELQAQAEALKIENINSLL CCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHH KQELVFAILQKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFG HHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHC LRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELE CCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHEEECCCCCCCCCCHHCCEEEC NNSKDSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLL CCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEE IDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAIT ECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMD HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCCHHH EVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRIID HHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC PMGSSEAMEFLLKKLKNTKTNNEFFEMMKSPERPKNGL CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNTTNKESTEELNNIGSNNSHNNFTENGNVINLKQLKRKLPEELQAQAEALKIENINSLL CCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHH KQELVFAILQKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFG HHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHC LRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELE CCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHEEECCCCCCCCCCHHCCEEEC NNSKDSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLL CCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEE IDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAIT ECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMD HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCCHHH EVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRIID HHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC PMGSSEAMEFLLKKLKNTKTNNEFFEMMKSPERPKNGL CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]