| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
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The map label for this gene is 157825630
Identifier: 157825630
GI number: 157825630
Start: 495026
End: 495859
Strand: Direct
Name: 157825630
Synonym: A1C_02735
Alternate gene names: NA
Gene position: 495026-495859 (Clockwise)
Preceding gene: 157825629
Following gene: 157825631
Centisome position: 40.21
GC content: 34.53
Gene sequence:
>834_bases ATGAACATTTTAGTTACTGCTCTTGAGCAATCCTTAATAATGCTGCCGCTTATTTTAGGAATGTATATAAGTTATCGTAT TCTAACACTTACCGATCTTACCGTAGACGGTACTTATGTACTAGGAGCTGCTGTATTTGCCCGCACTATTTCATTGGGGT TATTTCCTGCATTAATATTTGCCGTAATATCAGGAGGAATTATCGGCAGCATAGTGAGTTTTATGCAGAAAAATAACCGC ATTAACGGGCTGATATCTGGAATACTTGCAAATTTTATGCTTTATTCCATGAACTTACAAATTATGCAGCGTCCTAATAT ATCGGTTCTCGGTATGCCAACTCTGTTATCTATATTAGATCTTGATAATTGGTTAATACCTTTAATAACAATTAATTGTC TTATTATATCTGCTGTTATAATTTTATTGAAAGGTAAGCTTGGTTTATTTCTTCGTGCTTTTGGTTTTAATAAAGATTTA TTGATTAACTTAGGAAAACCTGCCGAGCTTTATCGCATGCTTGGGCTTAGTATAAGCAACTGCCTAGCTGCTTTAACTGG CACTTTATCGGCACAAATAAACGGTTTTGCCGATATTAATATGGGTTTTGGGGTGGCGCTAGTTGGTATCGGTGCAATTG TTATAGGGCGGCATATTTTAATCAATGCTAATAATTTCAATGCATTTAAAGAGATATTTTCTTGTTTTGTAGGTATATTA TTTTACTTTATTGCTCTGAGCCTTTTACTCCAAATTGGCATCGATCCTATAAACCTTAAGCTTATTTTAGGGATAGTATT GTTTATTTCGCTCAGTACTGTGAGTAAGCAGTAA
Upstream 100 bases:
>100_bases TTATTTATTAACCTTAAATCATTTGTTAAACAAGATATTCTGACTAAGGAAAATTTATCCGTACTTCCTTTGACTAAAAA AGAACTTACAGAGTAGTAAC
Downstream 100 bases:
>100_bases TTGTGTGGATACTAGAGTCATTGTTGTGTACGACTCCATGTGTTGTTGCATTATTGATGTCATTCCAGCGTAGGCGGGAA TGACATCAATATAAAAACGC
Product: ABC transporter permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAAVFARTISLGLFPALIFAVISGGIIGSIVSFMQKNNR INGLISGILANFMLYSMNLQIMQRPNISVLGMPTLLSILDLDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDL LINLGKPAELYRMLGLSISNCLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRHILINANNFNAFKEIFSCFVGIL FYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSKQ
Sequences:
>Translated_277_residues MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAAVFARTISLGLFPALIFAVISGGIIGSIVSFMQKNNR INGLISGILANFMLYSMNLQIMQRPNISVLGMPTLLSILDLDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDL LINLGKPAELYRMLGLSISNCLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRHILINANNFNAFKEIFSCFVGIL FYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSKQ >Mature_277_residues MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAAVFARTISLGLFPALIFAVISGGIIGSIVSFMQKNNR INGLISGILANFMLYSMNLQIMQRPNISVLGMPTLLSILDLDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDL LINLGKPAELYRMLGLSISNCLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRHILINANNFNAFKEIFSCFVGIL FYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSKQ
Specific function: Unknown
COG id: COG4120
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 29956; Mature: 29956
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAAVFARTISLGLFPALIF CCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH AVISGGIIGSIVSFMQKNNRINGLISGILANFMLYSMNLQIMQRPNISVLGMPTLLSILD HHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHEEECCCCEEECHHHHHHHHH LDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDLLINLGKPAELYRMLGLSISN CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHH CLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRHILINANNFNAFKEIFSCFVGIL HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH FYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSKQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAAVFARTISLGLFPALIF CCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH AVISGGIIGSIVSFMQKNNRINGLISGILANFMLYSMNLQIMQRPNISVLGMPTLLSILD HHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHEEECCCCEEECHHHHHHHHH LDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDLLINLGKPAELYRMLGLSISN CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHH CLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRHILINANNFNAFKEIFSCFVGIL HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH FYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSKQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]