Definition | Rickettsia akari str. Hartford, complete genome. |
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Accession | NC_009881 |
Length | 1,231,060 |
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The map label for this gene is 157825619
Identifier: 157825619
GI number: 157825619
Start: 483013
End: 484239
Strand: Reverse
Name: 157825619
Synonym: A1C_02680
Alternate gene names: NA
Gene position: 484239-483013 (Counterclockwise)
Preceding gene: 157825620
Following gene: 157825618
Centisome position: 39.34
GC content: 31.38
Gene sequence:
>1227_bases ATGATAAATTATTTAACTGCAACTTTAATATTCCTAATTCCAAGCCTTGGAATGGTAGCAGGCTTATCGGTTGCAGCTAC TGTTACAATTTTTTTGTTAATGTTATTTCTGCGAGGTATTAATAGTCATTACGAGCAACTAAAAGGAGCGTGGCCACCTC ATAAAGCAGGTCTCCTGAGATTGCTGCGTCAAAGCTTACAGTTTTTCCTTGCAATGACGATAAAAACCGAACTATTATTC GTCGCTTGGTGCTTTATATCTTGTTTATTCGGCATTCATCCTATTAATAGCCTAGTTACTTTTGCTCAAGTTTTCATACT TTTATTTCTTGGATTTATAGTTAGTCATTCTGCTCCTTTCAGGAATCGCTTGCAGTTCAAAAAAGCTTTAATACTCGGAA TTCTCACGGCAATATTATTATTCTTCATTGAATATTCTTCTCATGGTTTTTTAACAAGAATGTCCAAAACTAGTTTTGGC TTATATATGCTAGATCGAGGCTGTGCTTTACTTTCAATTACTTCTTGGGTAGCGATTATCATTTTACTCTCTAGCTGTAA AAGAAGAAACGCATTAATGCTATATATATTAGTGCTTTATTTATTAAGTATTTCCGATAGTTTAGCAAGTTTTGTAGGCT TTAGTATAAGCGGAGTAATATTTATTTTAGCAAGAGTTATAAAGCCGATATTTTTCAAATTAATTGCAATAAGTTTAATT ACCGGCACGTTACTATTTCCAGTTATAGCTAAACAAATAGAACCACAAGATTTATCTAAAAAATATTTAGCTACACAACC TTCCGCTGCTCATCGTTTATTTATTTGGCATTTTGTTGCAAATAAAATCATCGAAAAACCGATTTTAGGCTATGGCTTTG CTTCTTCTAAACATATCAAAGTCAATAATAGTGCAATGATCAACCACAATGGAGAAAAATGGCATCCTTTGCCTCTACAC CCTCATAATAATATATTACAAATTACTCTTGAACTCGGTACAATAGGTTTAATATTATTTTTATGCTTAGTTTATAAATA TCTCAAACAAATTAGTAATATCGAAAATAATAATTTCAAAGCAATTTCCTATGCATGTTTTATAAATTACTATATTATCG GTATGATTTCATATAATATTTGGCAAATATGGTGGATATCAAGCGGTATTTTGGTACCAGTTTTAATGAAGTTACTAGTT AAACCTGATATTGTCGTTGATAATTGA
Upstream 100 bases:
>100_bases ATTTACTCTTTCAAGGATGGATGACTTCTTCAAGCATTTCACTTTCAACATTTGAACACCCAATCTACGAAATTTTTGTG AAAGATTGTTTTGAATTGAA
Downstream 100 bases:
>100_bases TGCTATTTGGTATACATATAGAAGTAAATGTTTTATGTCATTCCAGCGGCGCAGGCGGGAATGACATAAACAGCACTTAT ACTCATACAATACAAACATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHYEQLKGAWPPHKAGLLRLLRQSLQFFLAMTIKTELLF VAWCFISCLFGIHPINSLVTFAQVFILLFLGFIVSHSAPFRNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFG LYMLDRGCALLSITSWVAIIILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISGVIFILARVIKPIFFKLIAISLI TGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIWHFVANKIIEKPILGYGFASSKHIKVNNSAMINHNGEKWHPLPLH PHNNILQITLELGTIGLILFLCLVYKYLKQISNIENNNFKAISYACFINYYIIGMISYNIWQIWWISSGILVPVLMKLLV KPDIVVDN
Sequences:
>Translated_408_residues MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHYEQLKGAWPPHKAGLLRLLRQSLQFFLAMTIKTELLF VAWCFISCLFGIHPINSLVTFAQVFILLFLGFIVSHSAPFRNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFG LYMLDRGCALLSITSWVAIIILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISGVIFILARVIKPIFFKLIAISLI TGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIWHFVANKIIEKPILGYGFASSKHIKVNNSAMINHNGEKWHPLPLH PHNNILQITLELGTIGLILFLCLVYKYLKQISNIENNNFKAISYACFINYYIIGMISYNIWQIWWISSGILVPVLMKLLV KPDIVVDN >Mature_408_residues MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHYEQLKGAWPPHKAGLLRLLRQSLQFFLAMTIKTELLF VAWCFISCLFGIHPINSLVTFAQVFILLFLGFIVSHSAPFRNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFG LYMLDRGCALLSITSWVAIIILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISGVIFILARVIKPIFFKLIAISLI TGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIWHFVANKIIEKPILGYGFASSKHIKVNNSAMINHNGEKWHPLPLH PHNNILQITLELGTIGLILFLCLVYKYLKQISNIENNNFKAISYACFINYYIIGMISYNIWQIWWISSGILVPVLMKLLV KPDIVVDN
Specific function: Unknown
COG id: COG3307
COG function: function code M; Lipid A core - O-antigen ligase and related enzymes
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the O-antigen polymerase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007016 [H]
Pfam domain/function: PF04932 Wzy_C [H]
EC number: NA
Molecular weight: Translated: 46121; Mature: 46121
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHYEQLKGAWPPHKAGLLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LLRQSLQFFLAMTIKTELLFVAWCFISCLFGIHPINSLVTFAQVFILLFLGFIVSHSAPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCH RNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFGLYMLDRGCALLSITSWVAII HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHCCCHHHHHHHHHHHH ILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISGVIFILARVIKPIFFKLIAISLI HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIWHFVANKIIEKPILGYGFASSKHIK HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE VNNSAMINHNGEKWHPLPLHPHNNILQITLELGTIGLILFLCLVYKYLKQISNIENNNFK ECCCEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH AISYACFINYYIIGMISYNIWQIWWISSGILVPVLMKLLVKPDIVVDN HHHHHHHHHHHHHHHHHHHHEEEEHCCCCCHHHHHHHHHCCCCCEECC >Mature Secondary Structure MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHYEQLKGAWPPHKAGLLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LLRQSLQFFLAMTIKTELLFVAWCFISCLFGIHPINSLVTFAQVFILLFLGFIVSHSAPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCH RNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFGLYMLDRGCALLSITSWVAII HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHCCCHHHHHHHHHHHH ILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISGVIFILARVIKPIFFKLIAISLI HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIWHFVANKIIEKPILGYGFASSKHIK HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE VNNSAMINHNGEKWHPLPLHPHNNILQITLELGTIGLILFLCLVYKYLKQISNIENNNFK ECCCEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH AISYACFINYYIIGMISYNIWQIWWISSGILVPVLMKLLVKPDIVVDN HHHHHHHHHHHHHHHHHHHHEEEEHCCCCCHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA