Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 157372964

GI number: 157372964

Start: 5229082

End: 5229855

Strand: Reverse

Name: ykgD [C]

Synonym: Spro_4732

Alternate gene names: 157372964

Gene position: 5229855-5229082 (Counterclockwise)

Preceding gene: 157372968

Following gene: 157372963

Centisome position: 95.98

GC content: 60.34

Gene sequence:

>774_bases
ATGATGAATAGTACAAATATGCACAAGCATGACCGGCTGGCCGCCTTTCTCAGGGCCTTTGATCTGAAAGTCAGGGTGCT
TTCCTGCCCGACAGACCATGCCAACCTCTACGTCGCTGCGCGTGAGGTGGGTGAAGGGGCATCACATATCCGTTTTAACG
TCGCAGGCGGGCCGCCGCCGGAAGGTGAGTTTGCGGTCATCGTCAGCGCCGGCGTCGATTTTTCCGGCGAGCTGAACCCG
CTGGTCGGTACCTTGCCCGACAGAATGGATTTCTTGCTGGCGGACACGCCGGCGCTGCAGGGCGTTGCCGATTTGTTTAT
TGGCGAAGCGCAATCCCCCCGTTGTGGAACGGTGTCGGTGCAGGATCGGTTGTGCGAAGTCATCATTGTGCTGGTCATCC
GGCGCGCTATTGCCGCCGGTGCGGTGAAAGCCGGCATGTTGGCCGGGTTGGCCCATCCCGCCCTTCACCGTAGCCTGGTT
GCCATGCACGACGAGCCGGCCTGCAAATGGTCGGTTGAAAGGCTGGCGCAGACCGCCGGCATGTCGCGCAGCCATTTTAT
CGAGCGATTCGGGACGGTTGTGGGGGAAACGCCGGGCGCTTATCTCACGGCATGGCGTTTAACGCTGGGCAGAAAAGCGC
TGATGTCGGGGCGAAGCGTCAAGCAGGTGGCCTATCAGGTTGGGTTTGGCAGCGTGGAGGCGTTTTCGCGGGCATTTTCC
GCCAAATATGGCGTGCCCCCGAGCTCAGTGAAAAAGGGGATGGGATTGCAGTGA

Upstream 100 bases:

>100_bases
AAAGGTATGCAGTAACGCGATGCGCATGTGGGGGGCTCCATGAGGTTTTGACGGTTGCCTGCAAACTAGCGTACTTTCTG
ACGGACAATGTCCAAATTCC

Downstream 100 bases:

>100_bases
TGAAATAAAAAAGCCAGGTGCTGATGCAACCTGGTTTTTTTGATGCACAATCAGGTGACTGGCGCAGGGTAATCAACGCT
TTTAAAAAACGTCAAATGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMNSTNMHKHDRLAAFLRAFDLKVRVLSCPTDHANLYVAAREVGEGASHIRFNVAGGPPPEGEFAVIVSAGVDFSGELNP
LVGTLPDRMDFLLADTPALQGVADLFIGEAQSPRCGTVSVQDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLV
AMHDEPACKWSVERLAQTAGMSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRSVKQVAYQVGFGSVEAFSRAFS
AKYGVPPSSVKKGMGLQ

Sequences:

>Translated_257_residues
MMNSTNMHKHDRLAAFLRAFDLKVRVLSCPTDHANLYVAAREVGEGASHIRFNVAGGPPPEGEFAVIVSAGVDFSGELNP
LVGTLPDRMDFLLADTPALQGVADLFIGEAQSPRCGTVSVQDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLV
AMHDEPACKWSVERLAQTAGMSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRSVKQVAYQVGFGSVEAFSRAFS
AKYGVPPSSVKKGMGLQ
>Mature_257_residues
MMNSTNMHKHDRLAAFLRAFDLKVRVLSCPTDHANLYVAAREVGEGASHIRFNVAGGPPPEGEFAVIVSAGVDFSGELNP
LVGTLPDRMDFLLADTPALQGVADLFIGEAQSPRCGTVSVQDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLV
AMHDEPACKWSVERLAQTAGMSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRSVKQVAYQVGFGSVEAFSRAFS
AKYGVPPSSVKKGMGLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=147, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 27444; Mature: 27444

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSTNMHKHDRLAAFLRAFDLKVRVLSCPTDHANLYVAAREVGEGASHIRFNVAGGPPP
CCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCC
EGEFAVIVSAGVDFSGELNPLVGTLPDRMDFLLADTPALQGVADLFIGEAQSPRCGTVSV
CCCEEEEEEECCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEHH
QDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLVAMHDEPACKWSVERLAQTAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
MSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRSVKQVAYQVGFGSVEAFSRAFS
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
AKYGVPPSSVKKGMGLQ
HCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MMNSTNMHKHDRLAAFLRAFDLKVRVLSCPTDHANLYVAAREVGEGASHIRFNVAGGPPP
CCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCC
EGEFAVIVSAGVDFSGELNPLVGTLPDRMDFLLADTPALQGVADLFIGEAQSPRCGTVSV
CCCEEEEEEECCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEHH
QDRLCEVIIVLVIRRAIAAGAVKAGMLAGLAHPALHRSLVAMHDEPACKWSVERLAQTAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
MSRSHFIERFGTVVGETPGAYLTAWRLTLGRKALMSGRSVKQVAYQVGFGSVEAFSRAFS
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
AKYGVPPSSVKKGMGLQ
HCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]