Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 157372934

GI number: 157372934

Start: 5197321

End: 5198013

Strand: Reverse

Name: ydfH [C]

Synonym: Spro_4702

Alternate gene names: 157372934

Gene position: 5198013-5197321 (Counterclockwise)

Preceding gene: 157372935

Following gene: 157372933

Centisome position: 95.4

GC content: 49.93

Gene sequence:

>693_bases
ATGAGATCCGTTATGAGTCGGCTGCTGTTGGATCGGGAAAAACCCGTCAAGATGCAAATTTACCATTGGCTGAAGGAACG
CATTATTTATGGTGAGTTTGCGCCGGGAATGATCCTGGAAAAAAACGAACTCGCGCATCAATTGAATGTATCGCCCACGC
CATTGCGAGAAGCTTTGATTTTGTTGAAGCATGACAACTTCATCGATATGGTGCCGAACCTGCATACACGGGTAAAACTG
ATAGAAGTCAAACGGGTAGAAGAGAACGCTTTTATCCGTGCGGCACTGGAAGGTGCGGTCGTCGAGCAATTGGCATTAAG
CGGTATCAGTAAAACGGTGGAAAAAGCCTGCCAAAAACTGATCGATAGCCAGCTTGGCGCTTTTGACAAGCAGGACTACG
CCAGCGTGTTTCGTTTTGATCTGGAGTTCCATCACCGGTTGGTCGACCAGCTGACGCTGGATTCGCTGTGGGATAATCTG
TATGCCAATCGCGCCCATCTGGATCGCGCTCGCCAGTGTTCACCGGTGAATGTGGCAGGTATTCGCCGCTCCATAGAACA
ACATCAGCAACTGCTGCAGTTGATCGTCAGTGGGCAGGTGCAACCCGCGCGGGAACTGATTAAAGCCCATGTTTGGTCAG
TGTTTGATGATTTGAAACAGATCGCACCGGAATACCTGAGCCGCGATCATTGA

Upstream 100 bases:

>100_bases
GGTATTGCTGTTGGTGACGCTGGTACCGGCGATTTCGACCTTTTTACCTGGGCTATAGCTTTGTAAACAGTGGGAGAATA
CTATTTCAGAAATACCACTT

Downstream 100 bases:

>100_bases
TTTTCCTGCCGCTTGGCTCCATGTTAGATATTCATACGCATTTTAAGGCCTGCCCGCTGCGGCGGGCCCCAACGCTAATC
AGGACTGCCCTATGACAAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRSVMSRLLLDREKPVKMQIYHWLKERIIYGEFAPGMILEKNELAHQLNVSPTPLREALILLKHDNFIDMVPNLHTRVKL
IEVKRVEENAFIRAALEGAVVEQLALSGISKTVEKACQKLIDSQLGAFDKQDYASVFRFDLEFHHRLVDQLTLDSLWDNL
YANRAHLDRARQCSPVNVAGIRRSIEQHQQLLQLIVSGQVQPARELIKAHVWSVFDDLKQIAPEYLSRDH

Sequences:

>Translated_230_residues
MRSVMSRLLLDREKPVKMQIYHWLKERIIYGEFAPGMILEKNELAHQLNVSPTPLREALILLKHDNFIDMVPNLHTRVKL
IEVKRVEENAFIRAALEGAVVEQLALSGISKTVEKACQKLIDSQLGAFDKQDYASVFRFDLEFHHRLVDQLTLDSLWDNL
YANRAHLDRARQCSPVNVAGIRRSIEQHQQLLQLIVSGQVQPARELIKAHVWSVFDDLKQIAPEYLSRDH
>Mature_230_residues
MRSVMSRLLLDREKPVKMQIYHWLKERIIYGEFAPGMILEKNELAHQLNVSPTPLREALILLKHDNFIDMVPNLHTRVKL
IEVKRVEENAFIRAALEGAVVEQLALSGISKTVEKACQKLIDSQLGAFDKQDYASVFRFDLEFHHRLVDQLTLDSLWDNL
YANRAHLDRARQCSPVNVAGIRRSIEQHQQLLQLIVSGQVQPARELIKAHVWSVFDDLKQIAPEYLSRDH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=218, Percent_Identity=27.5229357798165, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26619; Mature: 26619

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVMSRLLLDREKPVKMQIYHWLKERIIYGEFAPGMILEKNELAHQLNVSPTPLREALI
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCCHHHHHH
LLKHDNFIDMVPNLHTRVKLIEVKRVEENAFIRAALEGAVVEQLALSGISKTVEKACQKL
HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDSQLGAFDKQDYASVFRFDLEFHHRLVDQLTLDSLWDNLYANRAHLDRARQCSPVNVAG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
IRRSIEQHQQLLQLIVSGQVQPARELIKAHVWSVFDDLKQIAPEYLSRDH
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRSVMSRLLLDREKPVKMQIYHWLKERIIYGEFAPGMILEKNELAHQLNVSPTPLREALI
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCCHHHHHH
LLKHDNFIDMVPNLHTRVKLIEVKRVEENAFIRAALEGAVVEQLALSGISKTVEKACQKL
HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDSQLGAFDKQDYASVFRFDLEFHHRLVDQLTLDSLWDNLYANRAHLDRARQCSPVNVAG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
IRRSIEQHQQLLQLIVSGQVQPARELIKAHVWSVFDDLKQIAPEYLSRDH
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]