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The map label for this gene is hslR [H]

Identifier: 157372847

GI number: 157372847

Start: 5091411

End: 5091818

Strand: Direct

Name: hslR [H]

Synonym: Spro_4615

Alternate gene names: 157372847

Gene position: 5091411-5091818 (Clockwise)

Preceding gene: 157372846

Following gene: 157372848

Centisome position: 93.44

GC content: 57.11

Gene sequence:

>408_bases
ATGAAAGGAAAAGCAACAGGCGACGAAGCCGTCCGGCTGGACAAGTGGCTATGGGCGGCACGTTTCTATAAGACCCGCGC
ACTGGCACGGGAGATGATCGACGGCGGCAAGGTGCACTACAACGGACAGCGCGGCAAACCGAGCAAGATTGTCGAGCTTA
ACGCCGAGATCAAACTGCGTCAGGGAAATGAAGAACGCACGGTGATCGTGCTGGCTTTGACCAGCCAACGGCGCGGCGCC
GACGAGGCGCAGCAAATGTATCAGGAAACCGAGGCCAGCATCGTCAACCGAGAGAAAGTGGCGCTCGCGCGCAAAATGAA
TGCGCTGACCATGCCGCATCCGGACCGCCGTCCGGACAAGAAAGAGCGGCGCAACCTGATTAAATTTAAATTTGGTGAGC
AGGAATAA

Upstream 100 bases:

>100_bases
TGCAAAACCCGGATTCCAGCATGGCGGAGAAAACCTTCCAGCATTACCCATCGATGCGCGATTACCGCCTGTTGATACCG
GCGCTGGCCAGGGGGAATTG

Downstream 100 bases:

>100_bases
CCCCTCACCGCAATGAGAGAAAACTATGTCTAACCATGACCAATTGCACCGTTACCTGTTTGAAAACTACGCGGTGCGCG
GTGAGCTGGTTACCGTCAGC

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKGKATGDEAVRLDKWLWAARFYKTRALAREMIDGGKVHYNGQRGKPSKIVELNAEIKLRQGNEERTVIVLALTSQRRGA
DEAQQMYQETEASIVNREKVALARKMNALTMPHPDRRPDKKERRNLIKFKFGEQE

Sequences:

>Translated_135_residues
MKGKATGDEAVRLDKWLWAARFYKTRALAREMIDGGKVHYNGQRGKPSKIVELNAEIKLRQGNEERTVIVLALTSQRRGA
DEAQQMYQETEASIVNREKVALARKMNALTMPHPDRRPDKKERRNLIKFKFGEQE
>Mature_135_residues
MKGKATGDEAVRLDKWLWAARFYKTRALAREMIDGGKVHYNGQRGKPSKIVELNAEIKLRQGNEERTVIVLALTSQRRGA
DEAQQMYQETEASIVNREKVALARKMNALTMPHPDRRPDKKERRNLIKFKFGEQE

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=125, Percent_Identity=77.6, Blast_Score=205, Evalue=8e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15609; Mature: 15609

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGKATGDEAVRLDKWLWAARFYKTRALAREMIDGGKVHYNGQRGKPSKIVELNAEIKLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCEEEEE
QGNEERTVIVLALTSQRRGADEAQQMYQETEASIVNREKVALARKMNALTMPHPDRRPDK
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
KERRNLIKFKFGEQE
HHHCCEEEEECCCCC
>Mature Secondary Structure
MKGKATGDEAVRLDKWLWAARFYKTRALAREMIDGGKVHYNGQRGKPSKIVELNAEIKLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCEEEEE
QGNEERTVIVLALTSQRRGADEAQQMYQETEASIVNREKVALARKMNALTMPHPDRRPDK
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
KERRNLIKFKFGEQE
HHHCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]