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The map label for this gene is yhcC [H]

Identifier: 157372576

GI number: 157372576

Start: 4811715

End: 4812653

Strand: Reverse

Name: yhcC [H]

Synonym: Spro_4343

Alternate gene names: 157372576

Gene position: 4812653-4811715 (Counterclockwise)

Preceding gene: 157372579

Following gene: 157372575

Centisome position: 88.32

GC content: 60.92

Gene sequence:

>939_bases
ATGCAGTTGCCGCAATTAGTCAATATGTTTGGCGCCGATCTTCAGCGCCGCTACGGTGAAAAGATCCATAAACTCACGCT
GCATGGCGGTTTCAGTTGCCCGAACCGCGATGGCACGCTTGGGCGCGGTGGCTGTACCTTTTGCAATGTGGCCTCTTTCG
CCGATGAACAGATGCAGCAACAAAGTATCGCCGAGCAGTTGGCGCTGCAGGCGGTCAGGGTCAACCGCGCCAAGCGCTAT
CTGGCCTATTTCCAGGCTTATACCAGTACTTATGCCGAAGTGAGCCTGCTGGCACAGATGTATCGGCAGGCGCTGGCGCA
GGCGGATATGGTCGGTATCTGCGTCGGCACGCGCCCGGACTGTGTACCGCCCGCCGCGCTGGATCTGCTGGCGGGTTACC
TTGAACAGGGCTATGAGGTGTGGCTGGAGTTGGGGCTACAGACCGCGCACGATAAAACACTGAAACGCATCAATCGCGGC
CATGATTTCTCCTGTTATCAGCACACCGCCCGGCTGGCGCGTGAACGCGGGTTGAAGGTCTGCAGCCATCTGATTGTTGG
GCTGCCAGGGGAAACGGCCGCCGACCATCTGTCGACCCTGCAACAGGTGGTGGACAGCGGGGTGGACGGCATCAAGCTGC
ACCCGCTGCATATCGTGACCGGCAGCACCCTGGCGCGGGCCTGGCAGGCTGGGCGCTTGCCTGAGCTGGCGCTCGAGGAG
TATGCCTGCAGCGCCGGTGAGATGATCCGCCATACGCCGAAAGAGGTGGTGTATCACCGCATCTCCGCCAGTGCCCGCCG
GCCGACGCTGTTGGCACCATTATGGTGCGAAAACCGTTGGAACGGCATGCAGGCGGTGGGGGGCTATCTGCAACGCCATG
GCGGCCAGGGCAGCGCATTGGAAGAAAAGCAGCAATATCGCCCTTGCGCACTGTTTTGA

Upstream 100 bases:

>100_bases
CCTGGTGAAGCCTTGCGGGGAAAGCGTTGATCTCTGTCATCGCGGGAAAAGCCGTTTCTTATTAGCATCACGGGCTTTGA
GCACAGAGACTCCCAAGATT

Downstream 100 bases:

>100_bases
TTTGCAATCTTTCCCACACTTCGGCGTTTGCTTTCTTATCTCACCGGGGTTTTACGGTATGATTTACAAGATTCTGTCTG
ATGGGAGCGGCTATGAAGCA

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MQLPQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCNVASFADEQMQQQSIAEQLALQAVRVNRAKRY
LAYFQAYTSTYAEVSLLAQMYRQALAQADMVGICVGTRPDCVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRG
HDFSCYQHTARLARERGLKVCSHLIVGLPGETAADHLSTLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEE
YACSAGEMIRHTPKEVVYHRISASARRPTLLAPLWCENRWNGMQAVGGYLQRHGGQGSALEEKQQYRPCALF

Sequences:

>Translated_312_residues
MQLPQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCNVASFADEQMQQQSIAEQLALQAVRVNRAKRY
LAYFQAYTSTYAEVSLLAQMYRQALAQADMVGICVGTRPDCVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRG
HDFSCYQHTARLARERGLKVCSHLIVGLPGETAADHLSTLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEE
YACSAGEMIRHTPKEVVYHRISASARRPTLLAPLWCENRWNGMQAVGGYLQRHGGQGSALEEKQQYRPCALF
>Mature_312_residues
MQLPQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCNVASFADEQMQQQSIAEQLALQAVRVNRAKRY
LAYFQAYTSTYAEVSLLAQMYRQALAQADMVGICVGTRPDCVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRG
HDFSCYQHTARLARERGLKVCSHLIVGLPGETAADHLSTLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEE
YACSAGEMIRHTPKEVVYHRISASARRPTLLAPLWCENRWNGMQAVGGYLQRHGGQGSALEEKQQYRPCALF

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=300, Percent_Identity=76.6666666666667, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34609; Mature: 34609

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCNVASFADEQMQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QSIAEQLALQAVRVNRAKRYLAYFQAYTSTYAEVSLLAQMYRQALAQADMVGICVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
CVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRGHDFSCYQHTARLARERGLKV
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
CSHLIVGLPGETAADHLSTLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEE
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCHHHHHHHHCCCCHHHHHHH
YACSAGEMIRHTPKEVVYHRISASARRPTLLAPLWCENRWNGMQAVGGYLQRHGGQGSAL
HHCCHHHHHHCCHHHHHHHHHHHCCCCCCEECCHHHCCCCCHHHHHHHHHHHCCCCCCCH
EEKQQYRPCALF
HHHHHCCCCCCC
>Mature Secondary Structure
MQLPQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCNVASFADEQMQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QSIAEQLALQAVRVNRAKRYLAYFQAYTSTYAEVSLLAQMYRQALAQADMVGICVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
CVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRGHDFSCYQHTARLARERGLKV
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
CSHLIVGLPGETAADHLSTLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEE
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCHHHHHHHHCCCCHHHHHHH
YACSAGEMIRHTPKEVVYHRISASARRPTLLAPLWCENRWNGMQAVGGYLQRHGGQGSAL
HHCCHHHHHHCCHHHHHHHHHHHCCCCCCEECCHHHCCCCCHHHHHHHHHHHCCCCCCCH
EEKQQYRPCALF
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]