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The map label for this gene is exbD [H]

Identifier: 157372443

GI number: 157372443

Start: 4667396

End: 4667824

Strand: Reverse

Name: exbD [H]

Synonym: Spro_4210

Alternate gene names: 157372443

Gene position: 4667824-4667396 (Counterclockwise)

Preceding gene: 157372444

Following gene: 157372442

Centisome position: 85.67

GC content: 57.11

Gene sequence:

>429_bases
ATGGCGATGCGCTTAAATGAAGATCTGGACGACAGCGGCGAACTGCATGAAATCAACGTGACGCCGTTTATCGACGTCAT
GCTGGTGCTGTTGATCATCTTTATGGTGGCCGCGCCGCTGGCAACGGTAGATATCCGTGTCGATCTCCCGGCTTCCTCAG
CCAAACCGCAGCCGCGCCCGGAAAAACCGGTGTTCCTGTCGGTGAAAGCGGATAAGCAGCTGTACGTTGGCGAACAGGCA
GTCAGTGCAGATCAACTGACGTCGGTGCTGGATCAGCAAACTCAGGCCAACAAAGAGACCACCATCTTCTTCCAGGCGGA
CAAGACCGTGGACTACGAGACGCTGATGAGCGTGATGGATACGCTGCGTAAAGCCGGCTACCTGAAGGTGGGGCTGGTGG
GGATGGAAGGCACCGCCAAAGCGGGCTGA

Upstream 100 bases:

>100_bases
TGCTCAGGTGCTGCTGCTGCTGGGTCGCGATTTGGATCTGGCCGCCACGGCACAAGCCAAACGTTCACAGCATTCACAGC
AACTGCGGGTGGGGTGAGTT

Downstream 100 bases:

>100_bases
CATCACCAACGATAAAAAAGGCGCTCAGGCGCCTTTTTTATTGGCTGAGTTTTGTACAAAAGCTTGACGAGTCGTCAGTC
AATGAAATACTAATAGATAG

Product: TonB system transport protein ExbD type-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAMRLNEDLDDSGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIRVDLPASSAKPQPRPEKPVFLSVKADKQLYVGEQA
VSADQLTSVLDQQTQANKETTIFFQADKTVDYETLMSVMDTLRKAGYLKVGLVGMEGTAKAG

Sequences:

>Translated_142_residues
MAMRLNEDLDDSGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIRVDLPASSAKPQPRPEKPVFLSVKADKQLYVGEQA
VSADQLTSVLDQQTQANKETTIFFQADKTVDYETLMSVMDTLRKAGYLKVGLVGMEGTAKAG
>Mature_141_residues
AMRLNEDLDDSGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIRVDLPASSAKPQPRPEKPVFLSVKADKQLYVGEQAV
SADQLTSVLDQQTQANKETTIFFQADKTVDYETLMSVMDTLRKAGYLKVGLVGMEGTAKAG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=70.2127659574468, Blast_Score=209, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15530; Mature: 15399

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRLNEDLDDSGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIRVDLPASSAKPQPRP
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVFLSVKADKQLYVGEQAVSADQLTSVLDQQTQANKETTIFFQADKTVDYETLMSVMD
CCCEEEEEECCCEEECCCHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH
TLRKAGYLKVGLVGMEGTAKAG
HHHHCCCEEEEEEECCCCCCCC
>Mature Secondary Structure 
AMRLNEDLDDSGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIRVDLPASSAKPQPRP
CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVFLSVKADKQLYVGEQAVSADQLTSVLDQQTQANKETTIFFQADKTVDYETLMSVMD
CCCEEEEEECCCEEECCCHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH
TLRKAGYLKVGLVGMEGTAKAG
HHHHCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]