Click here to switch to the map view.

The map label for this gene is ygfB [C]

Identifier: 157372154

GI number: 157372154

Start: 4344214

End: 4344792

Strand: Reverse

Name: ygfB [C]

Synonym: Spro_3920

Alternate gene names: 157372154

Gene position: 4344792-4344214 (Counterclockwise)

Preceding gene: 157372157

Following gene: 157372153

Centisome position: 79.74

GC content: 55.61

Gene sequence:

>579_bases
ATGTCTATACAGAATACATTTCCAAGTTACCAATCTTTGACCCTTGCCCTCAACCAGCAAGCGGTGGCGTTGACCGCTGC
AGAAATGCACGGCCTGATCAGTGGCCTGTTGTGCGGTGGCAGCCGCGATGCCGGCTGGCAATCGCTGGTCTATGATCTGA
CAAACGAAGGCGTGGCCTTCCCGCAGGCGCTAAGCTTGCCACTTCAGCAACTTCATGAAATTACGCGTGAAACGCTGGAA
GACGACGATTTCATGTTCCAACTGATGATGCCGGAAGGCGAGACGGTCAGCGTGTTTGATCGCGCCGACGCGCTGAGCGG
TTGGGTGAACCATTTCCTGCTCGGGCTCGGCATGATGCAGCCGAAACTGGCTCAGGTGAAAGACGAGGTGGGTGAGGCGA
TCGACGATCTGCGCAATATCGCCCAACTCGGTTATGAAGAAGACGAAGACCAGGAAGAGCTTGAGCACTCTCTGGAGGAA
GTGGTGGAGTATGTGCGGATGGCAGCCATTTTGTGCCACACCGAATTTACCCGCCGCAAGCCGACGGCACCGGAAAATGC
CAAACCGACCTTGCACTAA

Upstream 100 bases:

>100_bases
GATTATAACTAGCCACTGAGGTGTCGTGCTTATCTGGTACAGCGACGGACCTTGGTGGTAGCATAACACGAACTTATCCT
GCCAACGATGACGAATACGC

Downstream 100 bases:

>100_bases
ATACCCGCTATCACGTCCTTAAGGCCGTGAGCACAGGCAGATTGATTTCAGGAGAAGGTGATGACTCAGCAGGAATTCAA
CAGCCGCCGTCAGGCGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSIQNTFPSYQSLTLALNQQAVALTAAEMHGLISGLLCGGSRDAGWQSLVYDLTNEGVAFPQALSLPLQQLHEITRETLE
DDDFMFQLMMPEGETVSVFDRADALSGWVNHFLLGLGMMQPKLAQVKDEVGEAIDDLRNIAQLGYEEDEDQEELEHSLEE
VVEYVRMAAILCHTEFTRRKPTAPENAKPTLH

Sequences:

>Translated_192_residues
MSIQNTFPSYQSLTLALNQQAVALTAAEMHGLISGLLCGGSRDAGWQSLVYDLTNEGVAFPQALSLPLQQLHEITRETLE
DDDFMFQLMMPEGETVSVFDRADALSGWVNHFLLGLGMMQPKLAQVKDEVGEAIDDLRNIAQLGYEEDEDQEELEHSLEE
VVEYVRMAAILCHTEFTRRKPTAPENAKPTLH
>Mature_191_residues
SIQNTFPSYQSLTLALNQQAVALTAAEMHGLISGLLCGGSRDAGWQSLVYDLTNEGVAFPQALSLPLQQLHEITRETLED
DDFMFQLMMPEGETVSVFDRADALSGWVNHFLLGLGMMQPKLAQVKDEVGEAIDDLRNIAQLGYEEDEDQEELEHSLEEV
VEYVRMAAILCHTEFTRRKPTAPENAKPTLH

Specific function: Unknown

COG id: COG3079

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0149 family

Homologues:

Organism=Escherichia coli, GI87082182, Length=192, Percent_Identity=65.1041666666667, Blast_Score=247, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3920_SERP5 (A8GIS5)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001480143.1
- ProteinModelPortal:   A8GIS5
- SMR:   A8GIS5
- STRING:   A8GIS5
- GeneID:   5604188
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_3920
- eggNOG:   COG3079
- HOGENOM:   HBG701093
- OMA:   ELMNDGQ
- ProtClustDB:   PRK01736
- BioCyc:   SPRO399741:SPRO_3920-MONOMER
- HAMAP:   MF_00346
- InterPro:   IPR011978
- TIGRFAMs:   TIGR02292

Pfam domain/function: PF03695 UPF0149; SSF101327 YgfB_YecA

EC number: NA

Molecular weight: Translated: 21436; Mature: 21305

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQNTFPSYQSLTLALNQQAVALTAAEMHGLISGLLCGGSRDAGWQSLVYDLTNEGVAF
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
PQALSLPLQQLHEITRETLEDDDFMFQLMMPEGETVSVFDRADALSGWVNHFLLGLGMMQ
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
PKLAQVKDEVGEAIDDLRNIAQLGYEEDEDQEELEHSLEEVVEYVRMAAILCHTEFTRRK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTAPENAKPTLH
CCCCCCCCCCCC
>Mature Secondary Structure 
SIQNTFPSYQSLTLALNQQAVALTAAEMHGLISGLLCGGSRDAGWQSLVYDLTNEGVAF
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
PQALSLPLQQLHEITRETLEDDDFMFQLMMPEGETVSVFDRADALSGWVNHFLLGLGMMQ
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
PKLAQVKDEVGEAIDDLRNIAQLGYEEDEDQEELEHSLEEVVEYVRMAAILCHTEFTRRK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTAPENAKPTLH
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA