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The map label for this gene is syd [H]

Identifier: 157372034

GI number: 157372034

Start: 4199704

End: 4200288

Strand: Reverse

Name: syd [H]

Synonym: Spro_3799

Alternate gene names: 157372034

Gene position: 4200288-4199704 (Counterclockwise)

Preceding gene: 157372038

Following gene: 157372032

Centisome position: 77.09

GC content: 54.53

Gene sequence:

>585_bases
ATGGTTGCCAGTTTACCGTATGCGAGAAAAAATATGGACCATGATGTACCGCACGCCCTGCGTGAATTTACCCAGCGCTA
TGTTGATCTTTGGCAGCAAGAGCGTGGTCATGCCCCAGCCAGCCAGGATCTGTACGGTGTGCCGTCGCCTTGCCTGGTAG
AAAATCGCGATGACGAAGTGCTGTGGTTGCCCCAGCCGTTTACCCCGGCGGCGACGCTGGAAAAGGTAGAGACCGCGCTC
GAGCTGCGCTTGCAGCCGGATATCAACCTGTTTTATACCCAGCAGTATGCGGGTGACATGAGCGCCCAGTTTGGTGAGCA
TCACGTGACTCTGTTGCAGGTATGGAGCGAGGACGACTTTATTCGTCTGCAGGAAAACCTGATCGGTCATCTGGTGACGC
AAAAGCGCCTGAAACTGTCGCCAACGCTGTTCCTGGCAACGACCGAATCAGAAATGACCATGGTCTCGCTGTGTAACGTT
AGCGGCAATGTGGTTTTGGAGCAGTTTGGCAGTGATAAACGCACTTTGCTGGCGGCTTCGTTGGGCAATTTCCTCGATGC
ATTGCGCCCGACGTTGGGTGTTTGA

Upstream 100 bases:

>100_bases
GGTCGCGATACGCGGTGGCTTTGCCCAGCGTCAGTGCCGACAGGGCTTGATGGTCTTGGTAGGAGGACATCTGCTGTCAC
CTTGGTAATAGATAGGTACA

Downstream 100 bases:

>100_bases
GCCTTTTTGTTCCGAAGTCCGTGTGCGAGATCTCGCACACGGGCTGTGAGAGATCGCTTTTAATTTTTCCCTCGCACTAG
CTTAGGTGGGATTTATTGTT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MVASLPYARKNMDHDVPHALREFTQRYVDLWQQERGHAPASQDLYGVPSPCLVENRDDEVLWLPQPFTPAATLEKVETAL
ELRLQPDINLFYTQQYAGDMSAQFGEHHVTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTESEMTMVSLCNV
SGNVVLEQFGSDKRTLLAASLGNFLDALRPTLGV

Sequences:

>Translated_194_residues
MVASLPYARKNMDHDVPHALREFTQRYVDLWQQERGHAPASQDLYGVPSPCLVENRDDEVLWLPQPFTPAATLEKVETAL
ELRLQPDINLFYTQQYAGDMSAQFGEHHVTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTESEMTMVSLCNV
SGNVVLEQFGSDKRTLLAASLGNFLDALRPTLGV
>Mature_194_residues
MVASLPYARKNMDHDVPHALREFTQRYVDLWQQERGHAPASQDLYGVPSPCLVENRDDEVLWLPQPFTPAATLEKVETAL
ELRLQPDINLFYTQQYAGDMSAQFGEHHVTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTESEMTMVSLCNV
SGNVVLEQFGSDKRTLLAASLGNFLDALRPTLGV

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family [H]

Homologues:

Organism=Escherichia coli, GI1789157, Length=181, Percent_Identity=55.8011049723757, Blast_Score=216, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009948 [H]

Pfam domain/function: PF07348 Syd [H]

EC number: NA

Molecular weight: Translated: 21939; Mature: 21939

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVASLPYARKNMDHDVPHALREFTQRYVDLWQQERGHAPASQDLYGVPSPCLVENRDDEV
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCE
LWLPQPFTPAATLEKVETALELRLQPDINLFYTQQYAGDMSAQFGEHHVTLLQVWSEDDF
EECCCCCCCHHHHHHHHHHHHEEECCCCEEEEEHHHCCCHHHHCCCCEEEEEEEECCCCH
IRLQENLIGHLVTQKRLKLSPTLFLATTESEMTMVSLCNVSGNVVLEQFGSDKRTLLAAS
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEECCCCCHHHHHHHH
LGNFLDALRPTLGV
HHHHHHHHHHHHCC
>Mature Secondary Structure
MVASLPYARKNMDHDVPHALREFTQRYVDLWQQERGHAPASQDLYGVPSPCLVENRDDEV
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCE
LWLPQPFTPAATLEKVETALELRLQPDINLFYTQQYAGDMSAQFGEHHVTLLQVWSEDDF
EECCCCCCCHHHHHHHHHHHHEEECCCCEEEEEHHHCCCHHHHCCCCEEEEEEEECCCCH
IRLQENLIGHLVTQKRLKLSPTLFLATTESEMTMVSLCNVSGNVVLEQFGSDKRTLLAAS
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEECCCCCHHHHHHHH
LGNFLDALRPTLGV
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA