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The map label for this gene is soxS [C]

Identifier: 157371947

GI number: 157371947

Start: 4101763

End: 4102776

Strand: Reverse

Name: soxS [C]

Synonym: Spro_3712

Alternate gene names: 157371947

Gene position: 4102776-4101763 (Counterclockwise)

Preceding gene: 157371949

Following gene: 157371946

Centisome position: 75.3

GC content: 58.68

Gene sequence:

>1014_bases
ATGCCGATAATGCCACTTATTCCGCTCACTTTTCTGTTTGGTTTGCTGTGCCTGGGGCTGTTGTACGGCCTGGGACGACC
GCGGCCGCAGCTTTGGGTTTTCCAGCTATTGCTGCTGTTATGTGCCTGGCAAAGTCTGCTGGTGGGTGTCCGCTACGGCT
ATGGCGTGACGCAACTCAACCGGTTGCAACCGTTCGGCGCGGTGGCGATCCCTGCGTTGACCTATCTGGCCTTTCTGGTC
AGTACCCAGGGCCGGCTTCGTTGGCGTGAGCTCGGGCACCTGACGCCGCTGGGCCTGACGCTGTTAGCCAGTCTGATCGC
GCCTTTTTGGCTGGATACCTTGATTGTTAGCGCTTATCTGGGTTACGGCCTGGCACTGCTGTACGCGTTGCGGCGCGGTG
AGAATGGCTTACAGCAGGTGGCGCTGGCGGAAAGTTGGCTCAGTTACCGGTTGTGGCGCGGTCTGGGCATGCTGTTAATA
GCCATCGCGCTGGCCGAACTGGTGATTGCACTCGATTTCTCACTGTTCGATGGCCGGCACGCTGCTGTGCTGGCGACCCT
CGTTAACGTGCTGGTGGCTTTGAGCCTTTATCTGGTGTTGTCCCGTAGCCGTCCCCTGGACCATCCGGTGGAGCCGCTGC
CGGAGCCGACGCCGGAGGCCACCGAGGACGAAGAGCAACTGGCCGAGTGGTTTGACCGGGTACAACAGCGGTTGCTGCAG
GATGATCTTTATCTGGAGCCTGAGCTGAACCTGGCCCGATTGGCGCGCAAAGTGGGCTTGCCGGCGCGTCGGGTGTCACA
AGCCATCAATCGGCATGCGGGCATGAATGTGTCGCAATATGTGAATCAGCTGCGTGTCCACCAGGCGGCGCAATGGCTGC
TTGCCAGTGATGATCCGGTGACCGATATCATGCAGGCGGCAGGCTTTACCACCAAGTCGAACTTTAACCGCGAATTTTTG
CGTATTTATAGTGTTAATCCGAGCGAATGGCGCAGGCAACAAACGCGTAGTTAA

Upstream 100 bases:

>100_bases
GGGTGGCATTGGCGGCGCTATCCGGCGACCTCGATCGCGATCCGGGTCGTTAAATGATTGTTTTGACAGTACACTGCCGG
TTCTGTGTGAACACAACAAG

Downstream 100 bases:

>100_bases
ATAATAATTCGTTATAACTCTCACATTTATCATCGGATCCCATCGGGGTATGCTGAGCACTGTTGCTTACCCCGTTCGAT
GCGAGCCACCTTCGATGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator; Transcriptional Regulator AraC/XylS Family; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Protein AraC Family; Transcriptional Regulator Protein; AraC Family Transcription Regulator

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MPIMPLIPLTFLFGLLCLGLLYGLGRPRPQLWVFQLLLLLCAWQSLLVGVRYGYGVTQLNRLQPFGAVAIPALTYLAFLV
STQGRLRWRELGHLTPLGLTLLASLIAPFWLDTLIVSAYLGYGLALLYALRRGENGLQQVALAESWLSYRLWRGLGMLLI
AIALAELVIALDFSLFDGRHAAVLATLVNVLVALSLYLVLSRSRPLDHPVEPLPEPTPEATEDEEQLAEWFDRVQQRLLQ
DDLYLEPELNLARLARKVGLPARRVSQAINRHAGMNVSQYVNQLRVHQAAQWLLASDDPVTDIMQAAGFTTKSNFNREFL
RIYSVNPSEWRRQQTRS

Sequences:

>Translated_337_residues
MPIMPLIPLTFLFGLLCLGLLYGLGRPRPQLWVFQLLLLLCAWQSLLVGVRYGYGVTQLNRLQPFGAVAIPALTYLAFLV
STQGRLRWRELGHLTPLGLTLLASLIAPFWLDTLIVSAYLGYGLALLYALRRGENGLQQVALAESWLSYRLWRGLGMLLI
AIALAELVIALDFSLFDGRHAAVLATLVNVLVALSLYLVLSRSRPLDHPVEPLPEPTPEATEDEEQLAEWFDRVQQRLLQ
DDLYLEPELNLARLARKVGLPARRVSQAINRHAGMNVSQYVNQLRVHQAAQWLLASDDPVTDIMQAAGFTTKSNFNREFL
RIYSVNPSEWRRQQTRS
>Mature_336_residues
PIMPLIPLTFLFGLLCLGLLYGLGRPRPQLWVFQLLLLLCAWQSLLVGVRYGYGVTQLNRLQPFGAVAIPALTYLAFLVS
TQGRLRWRELGHLTPLGLTLLASLIAPFWLDTLIVSAYLGYGLALLYALRRGENGLQQVALAESWLSYRLWRGLGMLLIA
IALAELVIALDFSLFDGRHAAVLATLVNVLVALSLYLVLSRSRPLDHPVEPLPEPTPEATEDEEQLAEWFDRVQQRLLQD
DLYLEPELNLARLARKVGLPARRVSQAINRHAGMNVSQYVNQLRVHQAAQWLLASDDPVTDIMQAAGFTTKSNFNREFLR
IYSVNPSEWRRQQTRS

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38006; Mature: 37875

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIMPLIPLTFLFGLLCLGLLYGLGRPRPQLWVFQLLLLLCAWQSLLVGVRYGYGVTQLN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLQPFGAVAIPALTYLAFLVSTQGRLRWRELGHLTPLGLTLLASLIAPFWLDTLIVSAYL
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GYGLALLYALRRGENGLQQVALAESWLSYRLWRGLGMLLIAIALAELVIALDFSLFDGRH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AAVLATLVNVLVALSLYLVLSRSRPLDHPVEPLPEPTPEATEDEEQLAEWFDRVQQRLLQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DDLYLEPELNLARLARKVGLPARRVSQAINRHAGMNVSQYVNQLRVHQAAQWLLASDDPV
HCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
TDIMQAAGFTTKSNFNREFLRIYSVNPSEWRRQQTRS
HHHHHHCCCCCCCCCCHHHHHEECCCHHHHHHHHCCC
>Mature Secondary Structure 
PIMPLIPLTFLFGLLCLGLLYGLGRPRPQLWVFQLLLLLCAWQSLLVGVRYGYGVTQLN
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLQPFGAVAIPALTYLAFLVSTQGRLRWRELGHLTPLGLTLLASLIAPFWLDTLIVSAYL
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GYGLALLYALRRGENGLQQVALAESWLSYRLWRGLGMLLIAIALAELVIALDFSLFDGRH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AAVLATLVNVLVALSLYLVLSRSRPLDHPVEPLPEPTPEATEDEEQLAEWFDRVQQRLLQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DDLYLEPELNLARLARKVGLPARRVSQAINRHAGMNVSQYVNQLRVHQAAQWLLASDDPV
HCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
TDIMQAAGFTTKSNFNREFLRIYSVNPSEWRRQQTRS
HHHHHHCCCCCCCCCCHHHHHEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA