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The map label for this gene is yihL [H]

Identifier: 157371817

GI number: 157371817

Start: 3957402

End: 3958109

Strand: Reverse

Name: yihL [H]

Synonym: Spro_3582

Alternate gene names: 157371817

Gene position: 3958109-3957402 (Counterclockwise)

Preceding gene: 157371818

Following gene: 157371816

Centisome position: 72.64

GC content: 53.95

Gene sequence:

>708_bases
ATGGAAAACAACTCTACCGTTGAACTGGCCAAGCAAAGGCTTAATGACTGGCTGAGTCAGGGCGCAATAGCCCCCGGCGA
CAAGCTTCCTTCGGAGCGAGAGCTGGGGGAATTGCTGAACATTAAACGCATGACGCTGCGTCAGGCGCTGCTGTTCCTGG
AAAGTGAGTCGAGGATATTCCGTAAGGATCGTCGGGGTTGGTTTGCAGCATTGCCACGCTTTAACTACAACCCCAATTCG
TCTACCAGCTTCAAACAGGCGGCCATTGAGCAGGGCCGTTCTCCCTCCTGGGGTTATATGACCAAGGAGCGGGTTTTGAC
GGCACCGGCGGCTATTTGCGATTTACTGCAGCTTAGTGAAGGGGCGGAGATCTACAAAATCTGTGGCTGGGGAGCGCTGG
ATAATCACATCGTGTTTTATCATGAAACCTTTATCAGTCCGCTGGTGGCACCCGACTTCATCGAACGCCTGGGTGAGAAC
TCGTTTGCCGATGTATGGGAAAACGCCTACGGAACCGCGACTCGCACCCATCATTTGGCTTTTAAGCCGACCCGATTGTC
CGGTGATGCCTGCAAGGTGATGGGCGGCAACGCCAGCACGCCGTCGATTCTGGTAGAGAAGCATCGTGCCGATGCCCAGC
GCCGTATCGTGCAGGTGGATATCGAATACTGGCGCTTCGAGTCGGTGGATTTTTTCATTAACTTATAG

Upstream 100 bases:

>100_bases
TCTGGGACAGGAGTCACATATAAAATTCAGTACCCCCATTGTTTGTCATAATTCACCGCGATACTGTTATGCAATCTGGT
TTAAACCAATAAAGTGAGCT

Downstream 100 bases:

>100_bases
GTGAACACCATGGATCGCTTAACGGCGGAGAAAGTTCTTCTGCGGGCGCAGAATTTGCCGCTTTATCTGCATGCCTACGC
CTTTCATCTCAATATGCGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MENNSTVELAKQRLNDWLSQGAIAPGDKLPSERELGELLNIKRMTLRQALLFLESESRIFRKDRRGWFAALPRFNYNPNS
STSFKQAAIEQGRSPSWGYMTKERVLTAPAAICDLLQLSEGAEIYKICGWGALDNHIVFYHETFISPLVAPDFIERLGEN
SFADVWENAYGTATRTHHLAFKPTRLSGDACKVMGGNASTPSILVEKHRADAQRRIVQVDIEYWRFESVDFFINL

Sequences:

>Translated_235_residues
MENNSTVELAKQRLNDWLSQGAIAPGDKLPSERELGELLNIKRMTLRQALLFLESESRIFRKDRRGWFAALPRFNYNPNS
STSFKQAAIEQGRSPSWGYMTKERVLTAPAAICDLLQLSEGAEIYKICGWGALDNHIVFYHETFISPLVAPDFIERLGEN
SFADVWENAYGTATRTHHLAFKPTRLSGDACKVMGGNASTPSILVEKHRADAQRRIVQVDIEYWRFESVDFFINL
>Mature_235_residues
MENNSTVELAKQRLNDWLSQGAIAPGDKLPSERELGELLNIKRMTLRQALLFLESESRIFRKDRRGWFAALPRFNYNPNS
STSFKQAAIEQGRSPSWGYMTKERVLTAPAAICDLLQLSEGAEIYKICGWGALDNHIVFYHETFISPLVAPDFIERLGEN
SFADVWENAYGTATRTHHLAFKPTRLSGDACKVMGGNASTPSILVEKHRADAQRRIVQVDIEYWRFESVDFFINL

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=234, Percent_Identity=60.6837606837607, Blast_Score=304, Evalue=3e-84,
Organism=Escherichia coli, GI87082252, Length=152, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26730; Mature: 26730

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNSTVELAKQRLNDWLSQGAIAPGDKLPSERELGELLNIKRMTLRQALLFLESESRIF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RKDRRGWFAALPRFNYNPNSSTSFKQAAIEQGRSPSWGYMTKERVLTAPAAICDLLQLSE
HHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GAEIYKICGWGALDNHIVFYHETFISPLVAPDFIERLGENSFADVWENAYGTATRTHHLA
CCCEEEEECCCCCCCCEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE
FKPTRLSGDACKVMGGNASTPSILVEKHRADAQRRIVQVDIEYWRFESVDFFINL
ECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEHHHEECCEEEEEEC
>Mature Secondary Structure
MENNSTVELAKQRLNDWLSQGAIAPGDKLPSERELGELLNIKRMTLRQALLFLESESRIF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RKDRRGWFAALPRFNYNPNSSTSFKQAAIEQGRSPSWGYMTKERVLTAPAAICDLLQLSE
HHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GAEIYKICGWGALDNHIVFYHETFISPLVAPDFIERLGENSFADVWENAYGTATRTHHLA
CCCEEEEECCCCCCCCEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE
FKPTRLSGDACKVMGGNASTPSILVEKHRADAQRRIVQVDIEYWRFESVDFFINL
ECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEHHHEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]