Definition | Serratia proteamaculans 568 chromosome, complete genome. |
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Accession | NC_009832 |
Length | 5,448,853 |
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The map label for this gene is yjeB [C]
Identifier: 157371753
GI number: 157371753
Start: 3891083
End: 3891625
Strand: Reverse
Name: yjeB [C]
Synonym: Spro_3516
Alternate gene names: 157371753
Gene position: 3891625-3891083 (Counterclockwise)
Preceding gene: 157371756
Following gene: 157371752
Centisome position: 71.42
GC content: 58.75
Gene sequence:
>543_bases ATGGCTTACATCACTACCAGCGTTGAATATGGCATTCACTGCCTGCTTTGGTTAGTCGGCGACAATCAGCGCGCGCTCAG CAGCCGTGAACTTGCCGAGCTGCAGGGGATCTCACCGAGTTTTCTGGCCAAAATTTTCCCCAAGCTGGAGAAAGCGGGGA TCGTCGCCGCGAGCGAAGGCGTACGCGGCGGCTATCGGTTGGCCCGTCCGGCCGATGAAATCACTTTCCTGGAGATCATC GATGCCATTGAAGGGCACAAGCCGTTGTTCGATTGCCAGGAAGTGCGCGGCCGTTGCGCGGTTTTTGACGACAACCCACC CGACTGGGCGCTGTCCGGCAAGTGTGCGATCCATGCAGTGATGCTGCAGGCCGAAAAGGCCATGCGCGATGCACTGGCGG TACAAACTCTGGGGGCCGTCGCCACTCGTTTCGGGCGCAAGGCACCACAGGGTTTCTTTGGTGAGGTCAACCTGTGGATG GATGAACGAATGAGCGAACGTACCACCCGCAGCGGCAAATCGGCCCGCACCAAGCCTAAATAA
Upstream 100 bases:
>100_bases ATTAAACGAAGATAAAGTTTGTCCGTGTTTTAATTGACAGGATAAACGTGGACTAATATAGTCTGTGTTATTGAATTCAT AGGTGCACCTCAAATCCAAT
Downstream 100 bases:
>100_bases CGTCTCAGCAGTTTCTCTGATTCTTTTTCCCGCCTGTGTGCCACAGGCGGTAGCCCTTCTGCACCCTTTTAACAGGCAGC GGAACGGCGCCACTCGCCTG
Product: BadM/Rrf2 family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator BadM/Rrf2 Family; Transcriptional Regulator; Rrf2 Family Protein; Rrf2 Family Transcriptional Regulator Protein; Rrf2 Family Protein Transcriptional Regulator; Transcriptional Regulator Protein; RF2 Family Protein; HTH-Type Transcriptional Regulator; Rrf2 Transcriptional Regulator; Rrf2 Protein; Transcriptional Regulator Badm/Rrf2 Family; Rrf2 Family Transcriptional Regulator; HTH Transcriptional Regulator; RRF2 Family Protein; Iron-Responsive Transcriptional Regulator; Rff2 Family Transcriptional Regulator; Transcriptional Regulator Rrf2 Family
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MAYITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRGGYRLARPADEITFLEII DAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQAEKAMRDALAVQTLGAVATRFGRKAPQGFFGEVNLWM DERMSERTTRSGKSARTKPK
Sequences:
>Translated_180_residues MAYITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRGGYRLARPADEITFLEII DAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQAEKAMRDALAVQTLGAVATRFGRKAPQGFFGEVNLWM DERMSERTTRSGKSARTKPK >Mature_179_residues AYITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRGGYRLARPADEITFLEIID AIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQAEKAMRDALAVQTLGAVATRFGRKAPQGFFGEVNLWMD ERMSERTTRSGKSARTKPK
Specific function: Unknown
COG id: COG1959
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19827; Mature: 19696
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: PS01332 UPF0074
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEG CCEEECCHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC VRGGYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAV CCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEECCCCCCCEECCHHHHHHH MLQAEKAMRDALAVQTLGAVATRFGRKAPQGFFGEVNLWMDERMSERTTRSGKSARTKPK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AYITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEG CEEECCHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC VRGGYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAV CCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEECCCCCCCEECCHHHHHHH MLQAEKAMRDALAVQTLGAVATRFGRKAPQGFFGEVNLWMDERMSERTTRSGKSARTKPK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA