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The map label for this gene is ccmF [H]

Identifier: 157371623

GI number: 157371623

Start: 3746579

End: 3748549

Strand: Reverse

Name: ccmF [H]

Synonym: Spro_3386

Alternate gene names: 157371623

Gene position: 3748549-3746579 (Counterclockwise)

Preceding gene: 157371624

Following gene: 157371622

Centisome position: 68.8

GC content: 60.32

Gene sequence:

>1971_bases
ATGATGCCGGAAACGGGAAGTTTTCTGCTGTGTCTGGCGCTGGCGATTTCGCTGCTGCTGAGCATTTACCCGCAGTGGGG
CGCAGCGCGTCAGGATCGCCGCATGATGGCGGTGGCGCGTCCGCTGACCTACGGCATGTTTGCCGCTATCGCGCTGGCGT
TCATCTGCCTGGTGCATGCCTTTGTGGTCAATGATTTTACCGTGGCTTATGTGGCCGCCAACTCCAACACGCAACTGCCG
GTGTATTACCGCATCGCCGCCACCTGGGGCGCCCATGAAGGGTCACTGCTGCTGTGGGTGTTGCTGCTCAGCTGTTGGTC
ACTGGCGGTGGCGTTGTGCAGCCGTGCGATGCCGCAAGACGCGGTGGCGCGCGTGCTGTCGGTGATGGGCATGATTACCG
CGGGTTTCCTGCTGTTCATTATCATGACCTCCAACCCGTTCACCCGCACCTTGCCGAATTTCCCGATCGACGGCAGCGAC
CTCAACCCGCTGTTGCAGGACATCGGCCTGATTTTCCACCCGCCACTGTTATATATGGGCTATGTCGGTTTCTCGGTGGC
CTTTGCTTTTGCTATTGCCTCACTGATGGCCGGCCGGCTGGATACCGCCTGGGCACGCTGGTCGCGTCCCTGGACTACCG
CGGCCTGGGTGTTCCTCACCATGGGTATCGTGCTGGGCTCAGCCTGGGCTTATTACGAACTGGGCTGGGGCGGCTGGTGG
TTCTGGGATCCGGTAGAGAACGCTTCATTTATGCCGTGGCTGGCCGGTACGGCGCTGATGCACTCGCTGGCGGTGACCGA
AAAACGCGGGACTTTCAAGGCCTGGACGGTGCTGCTGGCGATTACCGCCTTCTCGCTGTGCTTGCTGGGCACCTTCCTGG
TGCGTTCCGGCGTGCTGGTGTCGGTACACTCCTTTGCCTCCGATCCGGCGCGCGGCATGTTCATTCTCGCCTATCTGGTG
ATTGTGATCGGCGGTTCTTTGCTGCTGTACGCGGTCAAAGGCGGCCAGGTGCGCAGCCGGGTGCAGCATGAAACCTTCTC
GCGTGAAACCTTCCTGTTGGGCAACAACGTACTGTTGATTGCCGCGACGCTGGTGGTGTTGCTGGGCACGCTGTTGCCGC
TGGTGCATAAACAGCTTGGCCTGGGCAGTATTTCTATCGGTGAGCCGTTCTTCAATACCATGTTTACCTGGCTGATGGCC
CCGATGGCCTTGCTGATGGGCATCGGCCCGTTGGTGCGCTGGCGCCGTGATGAACCGACCAAGCTGTGGCGTCGCCTGAG
CGTGGCGCTGGTGATTACGCTGGTGCTGTCAGTCCTGTTGCCGTGGCTGCTGCAAGACAGCATCGCCGGTATGACGGTGG
TGGGGCTGATTATGGCGGTCTGGGTCATTATCCTGACGCTGATGGAACTGCACGAACGTGCTACTCATCGCCACGGTTTT
TGGCGTGGCCTGAGCCATCTTTCCCGCAGTCACTGGGGCATGGTGCTGGGTCACCTTGGCGTCGCGGTGACGGTAATCGG
TATTGCCTTTAGCCAGAACTACAGCGTGGAACGCGACGTCCGCATGAAGGCTGGCGACAGCGTGGATATCCATAACTATC
ACTTTGTGTTCCGTGATGTGCACGATATCCGTGGGCCGAACTATACCGGCGGCGTCGGTATCATCGACGTCACGCGCAAC
GGCAAGCCGGAAGCGACGCTGCACGCGGAGAAACGCTACTACAGCGTGGCGCGCAGCATGATGACCGAAGCGGCTATCGA
CGGCGGCTTCAGCCGTGACCTGTATGCGGCACTGGGCGAAGAGCTGGACGACGGCTCCTGGGCCGTGCGGTTGTACTATA
AACCCTTCGTACGCTGGATCTGGTTCGGTGGGGTATTTATGGCGGTCGGCGGCATCCTGTGTATTCTCGACCCGCGCTAC
CGGATGAGCAAAAAACTCAAGCGTGAAGGCAAGCTGGAGGAGCAGGCATGA

Upstream 100 bases:

>100_bases
ATGAAAAATACACACCGCCGGAGGTGGCCGACGCAATGAAAGAAAACCATAAGGGGCCGGCTTCGGCTTACGCCACCCCG
CAGAACGAGGGCGCTAAATC

Downstream 100 bases:

>100_bases
ACCGTAAACTGCTGTTTATCCCGTTAATCCTGTTCCTGCTGCTGGTGGCAGCGTTTATGGTGCAACTGACGCGCAATGCC
GGTGGCGAGGATCCGACCAT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MMPETGSFLLCLALAISLLLSIYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHAFVVNDFTVAYVAANSNTQLP
VYYRIAATWGAHEGSLLLWVLLLSCWSLAVALCSRAMPQDAVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSD
LNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLVSVHSFASDPARGMFILAYLV
IVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNVLLIAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMA
PMALLMGIGPLVRWRRDEPTKLWRRLSVALVITLVLSVLLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF
WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDVHDIRGPNYTGGVGIIDVTRN
GKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGEELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRY
RMSKKLKREGKLEEQA

Sequences:

>Translated_656_residues
MMPETGSFLLCLALAISLLLSIYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHAFVVNDFTVAYVAANSNTQLP
VYYRIAATWGAHEGSLLLWVLLLSCWSLAVALCSRAMPQDAVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSD
LNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLVSVHSFASDPARGMFILAYLV
IVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNVLLIAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMA
PMALLMGIGPLVRWRRDEPTKLWRRLSVALVITLVLSVLLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF
WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDVHDIRGPNYTGGVGIIDVTRN
GKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGEELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRY
RMSKKLKREGKLEEQA
>Mature_656_residues
MMPETGSFLLCLALAISLLLSIYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHAFVVNDFTVAYVAANSNTQLP
VYYRIAATWGAHEGSLLLWVLLLSCWSLAVALCSRAMPQDAVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSD
LNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLVSVHSFASDPARGMFILAYLV
IVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNVLLIAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMA
PMALLMGIGPLVRWRRDEPTKLWRRLSVALVITLVLSVLLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF
WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDVHDIRGPNYTGGVGIIDVTRN
GKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGEELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRY
RMSKKLKREGKLEEQA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=654, Percent_Identity=71.7125382262997, Blast_Score=918, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=336, Percent_Identity=49.1071428571429, Blast_Score=275, Evalue=7e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72889; Mature: 72889

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPETGSFLLCLALAISLLLSIYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAANSNTQLPVYYRIAATWGAHEGSLLLWVLLLSCWSLAVALCSRAMPQD
HHHCCCEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNVLLI
EEHHHCCCCCHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHCCCEEEECCCHHHH
AATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
KLWRRLSVALVITLVLSVLLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCEECCCHHHHHHHH
HDIRGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE
HHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
ELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRYRMSKKLKREGKLEEQA
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMPETGSFLLCLALAISLLLSIYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAANSNTQLPVYYRIAATWGAHEGSLLLWVLLLSCWSLAVALCSRAMPQD
HHHCCCEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNVLLI
EEHHHCCCCCHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHCCCEEEECCCHHHH
AATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
KLWRRLSVALVITLVLSVLLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCEECCCHHHHHHHH
HDIRGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE
HHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
ELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRYRMSKKLKREGKLEEQA
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]