Click here to switch to the map view.

The map label for this gene is yfcD [C]

Identifier: 157371555

GI number: 157371555

Start: 3675550

End: 3676107

Strand: Reverse

Name: yfcD [C]

Synonym: Spro_3318

Alternate gene names: 157371555

Gene position: 3676107-3675550 (Counterclockwise)

Preceding gene: 157371556

Following gene: 157371552

Centisome position: 67.47

GC content: 56.63

Gene sequence:

>558_bases
ATGGCGGAACAGGATCAGGCTGCAGATACCGAGTGGGTTGATATCGTCAACGAGCAAAACGAAGTGATTGCTCAATCCAG
TCGCCAACAGATGCGTGCCCAACGGCTGCGTCATCGTGCTACCTATATTGTGGTGCATGATGGAATGGGAAAAATTCTGG
TGCAGCGTCGCACCGATATTAAAGATTTCTATCCGGGCTGGCTGGACGCCACTGCGGGTGGGGTGGTGCAGAGCGGGGAG
AACGTGCTGGATTCCGCCCGTCGCGAAGCTGAAGAGGAGCTGGGCATTGCCGGCGTGCCTTTCGCCGAACACGGCCTGTT
CTACTTCGAAGAAGATCAGTGCCGGGTGTGGGGTGCATTATTCAGTTGCGTATCGCACGGCCCGTTTGCGCTGCAGGAAG
AGGAAGTGGTTGAGGTGAGCTGGCTAACACCGGAAGAGATCACCGCCCGCTGCGACGAATTCACGCCGGACTCGTTAAAA
GCGTTGTCGCTGTGGCTGACGCGTAACAACGAGCAGGCTTATGGCAAGCCGCTACGCGATAGCGATGAAAATGCCTGA

Upstream 100 bases:

>100_bases
AACGCACTAATTTATACACACACAATAAAAATCTTTGAAAAACACTCATTGATTAACCAGTGCGCGGGATGCATCGCGCC
AAAATAGAAGGTTTTAGAGG

Downstream 100 bases:

>100_bases
TGTGTTCGCGCAAATAAAAAAACCGGTCAATTGACCGGTTTTTTTTTATCTGATAATTCAGGAATTATCAGGCTTTGACT
GCTGCAGCATCAGCCTGGGA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MAEQDQAADTEWVDIVNEQNEVIAQSSRQQMRAQRLRHRATYIVVHDGMGKILVQRRTDIKDFYPGWLDATAGGVVQSGE
NVLDSARREAEEELGIAGVPFAEHGLFYFEEDQCRVWGALFSCVSHGPFALQEEEVVEVSWLTPEEITARCDEFTPDSLK
ALSLWLTRNNEQAYGKPLRDSDENA

Sequences:

>Translated_185_residues
MAEQDQAADTEWVDIVNEQNEVIAQSSRQQMRAQRLRHRATYIVVHDGMGKILVQRRTDIKDFYPGWLDATAGGVVQSGE
NVLDSARREAEEELGIAGVPFAEHGLFYFEEDQCRVWGALFSCVSHGPFALQEEEVVEVSWLTPEEITARCDEFTPDSLK
ALSLWLTRNNEQAYGKPLRDSDENA
>Mature_184_residues
AEQDQAADTEWVDIVNEQNEVIAQSSRQQMRAQRLRHRATYIVVHDGMGKILVQRRTDIKDFYPGWLDATAGGVVQSGEN
VLDSARREAEEELGIAGVPFAEHGLFYFEEDQCRVWGALFSCVSHGPFALQEEEVVEVSWLTPEEITARCDEFTPDSLKA
LSLWLTRNNEQAYGKPLRDSDENA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=167, Percent_Identity=83.8323353293413, Blast_Score=275, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 20946; Mature: 20815

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQDQAADTEWVDIVNEQNEVIAQSSRQQMRAQRLRHRATYIVVHDGMGKILVQRRTDI
CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHCCH
KDFYPGWLDATAGGVVQSGENVLDSARREAEEELGIAGVPFAEHGLFYFEEDQCRVWGAL
HHHCCCHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCHHHHHHHH
FSCVSHGPFALQEEEVVEVSWLTPEEITARCDEFTPDSLKALSLWLTRNNEQAYGKPLRD
HHHHCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHEEECCCCHHCCCCCCC
SDENA
CCCCC
>Mature Secondary Structure 
AEQDQAADTEWVDIVNEQNEVIAQSSRQQMRAQRLRHRATYIVVHDGMGKILVQRRTDI
CCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHCCH
KDFYPGWLDATAGGVVQSGENVLDSARREAEEELGIAGVPFAEHGLFYFEEDQCRVWGAL
HHHCCCHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCHHHHHHHH
FSCVSHGPFALQEEEVVEVSWLTPEEITARCDEFTPDSLKALSLWLTRNNEQAYGKPLRD
HHHHCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHEEECCCCHHCCCCCCC
SDENA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]