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The map label for this gene is pecT [H]

Identifier: 157371546

GI number: 157371546

Start: 3664217

End: 3665152

Strand: Reverse

Name: pecT [H]

Synonym: Spro_3309

Alternate gene names: 157371546

Gene position: 3665152-3664217 (Counterclockwise)

Preceding gene: 157371549

Following gene: 157371545

Centisome position: 67.26

GC content: 53.85

Gene sequence:

>936_bases
ATGACAACTGCAAATCGTCCGATACTCAATCTCGACCTCGATCTGCTAAGAACCTTTGTAGCTGTTGCTGATTTGAATAC
TTTTGCGGCGGCGGCAGTCGCCGTTTGTCGTACTCAATCAGCCGTCAGCCAACAAATGCAGCGGTTAGAGCAACTGGTTG
GCAAAGAGTTGTTTGCCCGTCATGGGCGCAACAAATTACTGACCGAACACGGTATTCAGCTTCTCGGCTACGCCAGGAAA
ATCCTGCGCTTCAACGACGAAGCCTGTACTTCTCTGATGTACAACAATATTAAAGGTGTTCTGACTATTGGCGCTTCTGA
TGATACCGCCGATACCATCCTGCCTTTCCTGCTTAACCGCGTCACTTCGGTGTATCCAAAACTGGCGATTGATGTCCGGG
TGAAACCCAGCTCGTTCATGATCGACATGCTGGAAAACGGTGAAGTCGATCTGGCTATTACCACTATGGCTACCGCGGAT
CGCCCGCACATTGTGCTGCGTACTTCGCCAACCCTGTGGTATTGCGCGGCGGATTACCATTTCCAGGCCGGCGAACCGAT
CCCGTTGGTGGTGATGGACGAACCCAGTCCGTTCCGCTCGATGGCGATCAAACATCTGGATGAAGCCGGGATCCCATGGC
GGATTGCTTATGTGGCTTCGACGTTGTCCGCCGTTCGCGCAGCCTGCAAGGCCGGATTGGGCATCACCGTTCGGCCGATT
GAAATGATGAGCCCGGACCTGCGGGTGCTCGGTGCAATGGAAGGGCTACCGGCACTGCCAGATACTCAATATAGCCTGTG
CCAGGATACCCAGTGCGGCAATGAGCTGGCGATGGCGATATTCAGCACCATGCAGAACGGCAACGACAACTACAGTTTCA
GTGGGCCGAGTTCCTCGCTGGAAGATGACGCCTGTCTGGTTGACGATGAGGAATAA

Upstream 100 bases:

>100_bases
GTGGGGTACTGTCATGTCTGACATCGTCCCTTTTAAACGATGTCTTAGAAACACACCAGGGTAGTTTGTAAATTAGAATT
TAAAAAGTGAAGAAAACACT

Downstream 100 bases:

>100_bases
CGCCCAAAAGCGTTAAACCGGGTAATAAAACCTCTGCTTCGGCGGAGGTTTTTTTTGCCCTGAATTCGATGAAAATTAGA
TTTATGAGGGTTTTGATTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTTANRPILNLDLDLLRTFVAVADLNTFAAAAVAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARK
ILRFNDEACTSLMYNNIKGVLTIGASDDTADTILPFLLNRVTSVYPKLAIDVRVKPSSFMIDMLENGEVDLAITTMATAD
RPHIVLRTSPTLWYCAADYHFQAGEPIPLVVMDEPSPFRSMAIKHLDEAGIPWRIAYVASTLSAVRAACKAGLGITVRPI
EMMSPDLRVLGAMEGLPALPDTQYSLCQDTQCGNELAMAIFSTMQNGNDNYSFSGPSSSLEDDACLVDDEE

Sequences:

>Translated_311_residues
MTTANRPILNLDLDLLRTFVAVADLNTFAAAAVAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARK
ILRFNDEACTSLMYNNIKGVLTIGASDDTADTILPFLLNRVTSVYPKLAIDVRVKPSSFMIDMLENGEVDLAITTMATAD
RPHIVLRTSPTLWYCAADYHFQAGEPIPLVVMDEPSPFRSMAIKHLDEAGIPWRIAYVASTLSAVRAACKAGLGITVRPI
EMMSPDLRVLGAMEGLPALPDTQYSLCQDTQCGNELAMAIFSTMQNGNDNYSFSGPSSSLEDDACLVDDEE
>Mature_310_residues
TTANRPILNLDLDLLRTFVAVADLNTFAAAAVAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKI
LRFNDEACTSLMYNNIKGVLTIGASDDTADTILPFLLNRVTSVYPKLAIDVRVKPSSFMIDMLENGEVDLAITTMATADR
PHIVLRTSPTLWYCAADYHFQAGEPIPLVVMDEPSPFRSMAIKHLDEAGIPWRIAYVASTLSAVRAACKAGLGITVRPIE
MMSPDLRVLGAMEGLPALPDTQYSLCQDTQCGNELAMAIFSTMQNGNDNYSFSGPSSSLEDDACLVDDEE

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=308, Percent_Identity=70.4545454545455, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=29.3706293706294, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994962, Length=150, Percent_Identity=31.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=243, Percent_Identity=25.1028806584362, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=181, Percent_Identity=30.3867403314917, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=36.1702127659575, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=24.2798353909465, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=31.0344827586207, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34051; Mature: 33920

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTANRPILNLDLDLLRTFVAVADLNTFAAAAVAVCRTQSAVSQQMQRLEQLVGKELFAR
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGRNKLLTEHGIQLLGYARKILRFNDEACTSLMYNNIKGVLTIGASDDTADTILPFLLNR
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
VTSVYPKLAIDVRVKPSSFMIDMLENGEVDLAITTMATADRPHIVLRTSPTLWYCAADYH
HHHHCCCEEEEEEECCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCE
FQAGEPIPLVVMDEPSPFRSMAIKHLDEAGIPWRIAYVASTLSAVRAACKAGLGITVRPI
ECCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEH
EMMSPDLRVLGAMEGLPALPDTQYSLCQDTQCGNELAMAIFSTMQNGNDNYSFSGPSSSL
HHCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
EDDACLVDDEE
CCCCCCCCCCC
>Mature Secondary Structure 
TTANRPILNLDLDLLRTFVAVADLNTFAAAAVAVCRTQSAVSQQMQRLEQLVGKELFAR
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGRNKLLTEHGIQLLGYARKILRFNDEACTSLMYNNIKGVLTIGASDDTADTILPFLLNR
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
VTSVYPKLAIDVRVKPSSFMIDMLENGEVDLAITTMATADRPHIVLRTSPTLWYCAADYH
HHHHCCCEEEEEEECCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCE
FQAGEPIPLVVMDEPSPFRSMAIKHLDEAGIPWRIAYVASTLSAVRAACKAGLGITVRPI
ECCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEH
EMMSPDLRVLGAMEGLPALPDTQYSLCQDTQCGNELAMAIFSTMQNGNDNYSFSGPSSSL
HHCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
EDDACLVDDEE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]