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The map label for this gene is ybhD [H]

Identifier: 157371420

GI number: 157371420

Start: 3502363

End: 3503262

Strand: Reverse

Name: ybhD [H]

Synonym: Spro_3181

Alternate gene names: 157371420

Gene position: 3503262-3502363 (Counterclockwise)

Preceding gene: 157371421

Following gene: 157371416

Centisome position: 64.29

GC content: 54.56

Gene sequence:

>900_bases
ATGCCCGTGAATTTTGATCTCAACGATCTCTATGCCTTCCGCGCGTTGGTTGAATACGGCAATTTTCGGCTTGCCGCGGA
GTCCATCTGCCTTTCGCAGTCAGCATTGAGCCGCAGGATAGAGAAGCTGGAATCCGCGCTGGGCATTAAGCTGTTCGATA
GAACCACCAGACGTGTCACGCTAACCCTTTATGGACAGACCTTCGCCGAGCGTTCAGATCAACTATTGATGAACGTTGAG
TTGGTATTAGCAGATATCAATAAAGTCAGTCAGGACAGAACGGGCCTGGTCACCGTCGCCACGGTGCCTTCAGCGGCCTA
CTACTTCATGCCCGACGTGATTCGCCGCTTCCAGGCTCGCTATCCCCGCGTACGCGTTAAGCTTATCGATAGCAGTGCAG
GCAATGTCATCGAAGCGGTTACCAGTGGCCAGGCCGACTTCGGCATCTGTTTTGCGAGAAACTTGCAACCCAATATCGAA
TTTCTGCCGTTGATTGGGGATGTTTATGTGGCCGCCTGCAGGCGCGATCACCCTCTGGCCACTAAAAAAAGCCTGACCTG
GCGCGAGTTTTATCAGCAGGATTATGTGGGGCTGGATAAAACCTCCGGCAACCGCAATCTGCTCGATCAGATGCTGGCGC
ATATCATCCCTGAGCGTCCCAGCCTCTGCGAAACCCGCCATGTGACGACCCTGCTGGGCATGGTTGAGGCGGGTATCGGC
ATTGCCGCCGTACCCGCTATGTCTATGCCGGGATCGGATCATTCGGTGCTGACTCACCTGCCGCTGACCGAGCCGGTTGT
AAAGCGTACCGTTGGCCTGATCAGGCGCAGCGGACGTATGCAATCCTATCTTGCCGCTGAGTTGGAAAAATTGATCACTG
AACAGTATCACTCTGCCTAG

Upstream 100 bases:

>100_bases
ATTAATTCCTTATTCTATGCTGCCGTGTTGCCGTTGTCGGATAAGTGGCTATCATCTTTCCTTTAAACCCTTGCCGCTGC
CGAAAGGATTGCCTGCCACT

Downstream 100 bases:

>100_bases
CCGGTTGTTCAGCCTTCACGGTTCTCATCCCGGTGGCGCGAATGGTTTTTTGCGCCTGCGAGGAGGACAGGAAATCCAGT
AGCGCTTTGCCTTCCTGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MPVNFDLNDLYAFRALVEYGNFRLAAESICLSQSALSRRIEKLESALGIKLFDRTTRRVTLTLYGQTFAERSDQLLMNVE
LVLADINKVSQDRTGLVTVATVPSAAYYFMPDVIRRFQARYPRVRVKLIDSSAGNVIEAVTSGQADFGICFARNLQPNIE
FLPLIGDVYVAACRRDHPLATKKSLTWREFYQQDYVGLDKTSGNRNLLDQMLAHIIPERPSLCETRHVTTLLGMVEAGIG
IAAVPAMSMPGSDHSVLTHLPLTEPVVKRTVGLIRRSGRMQSYLAAELEKLITEQYHSA

Sequences:

>Translated_299_residues
MPVNFDLNDLYAFRALVEYGNFRLAAESICLSQSALSRRIEKLESALGIKLFDRTTRRVTLTLYGQTFAERSDQLLMNVE
LVLADINKVSQDRTGLVTVATVPSAAYYFMPDVIRRFQARYPRVRVKLIDSSAGNVIEAVTSGQADFGICFARNLQPNIE
FLPLIGDVYVAACRRDHPLATKKSLTWREFYQQDYVGLDKTSGNRNLLDQMLAHIIPERPSLCETRHVTTLLGMVEAGIG
IAAVPAMSMPGSDHSVLTHLPLTEPVVKRTVGLIRRSGRMQSYLAAELEKLITEQYHSA
>Mature_298_residues
PVNFDLNDLYAFRALVEYGNFRLAAESICLSQSALSRRIEKLESALGIKLFDRTTRRVTLTLYGQTFAERSDQLLMNVEL
VLADINKVSQDRTGLVTVATVPSAAYYFMPDVIRRFQARYPRVRVKLIDSSAGNVIEAVTSGQADFGICFARNLQPNIEF
LPLIGDVYVAACRRDHPLATKKSLTWREFYQQDYVGLDKTSGNRNLLDQMLAHIIPERPSLCETRHVTTLLGMVEAGIGI
AAVPAMSMPGSDHSVLTHLPLTEPVVKRTVGLIRRSGRMQSYLAAELEKLITEQYHSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=272, Percent_Identity=38.9705882352941, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=33.1058020477816, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=26.3736263736264, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789204, Length=303, Percent_Identity=27.3927392739274, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790399, Length=276, Percent_Identity=25.7246376811594, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787530, Length=292, Percent_Identity=28.0821917808219, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.0491803278689, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787601, Length=303, Percent_Identity=24.4224422442244, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=34.4827586206897, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=23.9669421487603, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788296, Length=174, Percent_Identity=31.6091954022989, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787806, Length=277, Percent_Identity=23.826714801444, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082132, Length=144, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787128, Length=134, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=149, Percent_Identity=32.2147651006711, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=26.2857142857143, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789506, Length=140, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=23.8683127572016, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786508, Length=182, Percent_Identity=25.2747252747253, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=133, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786448, Length=167, Percent_Identity=29.940119760479, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33453; Mature: 33322

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNFDLNDLYAFRALVEYGNFRLAAESICLSQSALSRRIEKLESALGIKLFDRTTRRVT
CCCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEE
LTLYGQTFAERSDQLLMNVELVLADINKVSQDRTGLVTVATVPSAAYYFMPDVIRRFQAR
EEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
YPRVRVKLIDSSAGNVIEAVTSGQADFGICFARNLQPNIEFLPLIGDVYVAACRRDHPLA
CCEEEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHCCCCCCC
TKKSLTWREFYQQDYVGLDKTSGNRNLLDQMLAHIIPERPSLCETRHVTTLLGMVEAGIG
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
IAAVPAMSMPGSDHSVLTHLPLTEPVVKRTVGLIRRSGRMQSYLAAELEKLITEQYHSA
EEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVNFDLNDLYAFRALVEYGNFRLAAESICLSQSALSRRIEKLESALGIKLFDRTTRRVT
CCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEE
LTLYGQTFAERSDQLLMNVELVLADINKVSQDRTGLVTVATVPSAAYYFMPDVIRRFQAR
EEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
YPRVRVKLIDSSAGNVIEAVTSGQADFGICFARNLQPNIEFLPLIGDVYVAACRRDHPLA
CCEEEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHCCCCCCC
TKKSLTWREFYQQDYVGLDKTSGNRNLLDQMLAHIIPERPSLCETRHVTTLLGMVEAGIG
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
IAAVPAMSMPGSDHSVLTHLPLTEPVVKRTVGLIRRSGRMQSYLAAELEKLITEQYHSA
EEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]