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The map label for this gene is yciT [H]

Identifier: 157370883

GI number: 157370883

Start: 2913095

End: 2913841

Strand: Direct

Name: yciT [H]

Synonym: Spro_2643

Alternate gene names: 157370883

Gene position: 2913095-2913841 (Clockwise)

Preceding gene: 157370882

Following gene: 157370885

Centisome position: 53.46

GC content: 53.01

Gene sequence:

>747_bases
ATGAATTCAAGACAACAGACAATATTGCAATTGGTTAACGATCGTCGGCGCATCAGCGTCAGCGATTTAGCTGCCGCTAC
CGGTGTTTCTGAGGTGACAATCCGTCAGGATTTGAACCTGCTGGAGAAACGCAGCTATTTGAAACGGGTGCATGGTTCCG
CGCTGGCGCTGGAAAGTGACGACGTCGATGCACGCATGATGTCCAACTTCACCCTCAAGCAAAAGCTGGCGCAATATGCC
GCGTCGCTGGTTAACGACGATGAAACCATCTTTATCGAAAGCGGCAGTGCCAACGCGCTGTTGGCTCGCTACATTGCCGA
ACGCAAGCGCATCACGCTGATCACCGTCAGCCACTATATCGCCAACCTGCTGAAAGAGACCGACTGCGAGGTGATCGTGC
TGGGCGGCCTGTATCAGAAAAAAAGCGAAACCGTGGTCGGGCCGCTAACGCGACAATGTATTCAGCAGGTGCATTTCAGC
AAGGCGTTTATCGGCATTGATGGCTACCATGCGGACACCGGCTTTACCGGTCGCGATATGATGCGCGCCGATGTGGTTAA
TGCCGTGCTGGCCAAGGGCGTAGAGAATATTGTCCTGACCGACTCGTCCAAGTTTGGTCAAATACAGCCCAACCCACTGA
CTCAGCAGGGAAAAGTGCATCGGGTGATCACCGATTCCCGGCTGTCACTGGACTATCAGCACCAGTTAAAACGCCAGGGA
ATACAGTTGGATATAGTAAACGACTAG

Upstream 100 bases:

>100_bases
ATCCCCTGACGCGCAGGATGATATTATTGCGCGAACAGAACATACTATTTAAACAACAAATATTAGCGGCCGCACCTTGG
TGGCCGCACATCAGGTTGAT

Downstream 100 bases:

>100_bases
GCTCCAGGCGGGGAAATGGTGGCCGTCACACGACGGCCTACCTGAGGGTTACTGACCGTAATAGGCATTTTTACCGTGCT
TACGCAGGTAATGTTTGTCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNSRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESDDVDARMMSNFTLKQKLAQYA
ASLVNDDETIFIESGSANALLARYIAERKRITLITVSHYIANLLKETDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFS
KAFIGIDGYHADTGFTGRDMMRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG
IQLDIVND

Sequences:

>Translated_248_residues
MNSRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESDDVDARMMSNFTLKQKLAQYA
ASLVNDDETIFIESGSANALLARYIAERKRITLITVSHYIANLLKETDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFS
KAFIGIDGYHADTGFTGRDMMRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG
IQLDIVND
>Mature_248_residues
MNSRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESDDVDARMMSNFTLKQKLAQYA
ASLVNDDETIFIESGSANALLARYIAERKRITLITVSHYIANLLKETDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFS
KAFIGIDGYHADTGFTGRDMMRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG
IQLDIVND

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=248, Percent_Identity=64.9193548387097, Blast_Score=327, Evalue=7e-91,
Organism=Escherichia coli, GI1789059, Length=250, Percent_Identity=30, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=26.3779527559055, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788069, Length=245, Percent_Identity=25.7142857142857, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=25.6916996047431, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI226510968, Length=246, Percent_Identity=23.9837398373984, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787063, Length=250, Percent_Identity=25.6, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790635, Length=252, Percent_Identity=25.7936507936508, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=24.1379310344828, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87082344, Length=208, Percent_Identity=24.0384615384615, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27673; Mature: 27673

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESD
CCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVDARMMSNFTLKQKLAQYAASLVNDDETIFIESGSANALLARYIAERKRITLITVSHYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHH
ANLLKETDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFSKAFIGIDGYHADTGFTGRDM
HHHHHCCCCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHEEECCCEECCCCCCHHHH
MRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCC
IQLDIVND
CEEEEECC
>Mature Secondary Structure
MNSRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESD
CCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVDARMMSNFTLKQKLAQYAASLVNDDETIFIESGSANALLARYIAERKRITLITVSHYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHH
ANLLKETDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFSKAFIGIDGYHADTGFTGRDM
HHHHHCCCCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHEEECCCEECCCCCCHHHH
MRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCC
IQLDIVND
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]