| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is pdxK [H]
Identifier: 157370806
GI number: 157370806
Start: 2820763
End: 2821602
Strand: Direct
Name: pdxK [H]
Synonym: Spro_2566
Alternate gene names: 157370806
Gene position: 2820763-2821602 (Clockwise)
Preceding gene: 157370805
Following gene: 157370811
Centisome position: 51.77
GC content: 54.64
Gene sequence:
>840_bases ATGCAACAGGTTTCTCAATTACAACCGCCGCAGATTGATGTGATCAGTATTCAATCGCAGGTCGTGTATGGCAGCGTCGG CAACGGTATCGCCTATCGCACCTTGCTGAAAAAAGGGCTGGAAGCGTTACAGGTACCCAGCGTGCTGTTCGGCTGCCCGC CCTATTATGGCGCGCCCAGCGGTGGCGTAATTCCGGCCGAGTGGTTCAGCGGCTTTCTCGAGGATTTACTGACCCGCGGC GTAATGAAACGCACCCGGGCGGTGATCATCGGTTATCTGGGCGACGTTGGCCAATGTCATTTTCTACACACCTGGCTACA ACGCGTGCGCGCTATCAATCCGCAGATAAAAATTTATATCGACCCGGTGATGGGCGATTACGGTGAAGGCGTTTACGTGG ATGAGCGTATCGTCAGTTGCTATCGCTCGCCGTTCCTGCAACTGGCTAATGGCCTCACCCCAAACGGTTTCGAACTGGAG CAACTTTGCGGGCATCCGTTAACCAGCCGAGAGCAAACGCAGCATGCCGCACAGGCGTTATTGAATGACACTACCGAGTG GGTACTGGTGACCAGTGCGCCAGGCGTGGCGGAAAATGACGATCAGATTGGCTTACTGTTGGTCAGCCACGACGAGGTGC AAAGCTATACCCATCCCAAGATTCAGTCGAAGGTAAAGGGCACCGGTGACATGTTCACCGCGTTGCTGGTCAGCCATTTG TTGAACGGGAAAAATCTCAATAGTGCAGTCCTGACCGCCAGCAGTGAGGTCTGCGATGTGCTGACTGAAGCGGCGCATTT CGGTTTGGAGGAAATCGGCAGCCTGCGTGCCTTGAAATAG
Upstream 100 bases:
>100_bases TTTGCGCCAACAGGCTGCGCGCCACGGTACAGAATTAGAACAGCGCGCCCGTCAGGTATTTACGCGGTGGCTGGATAAAG TCGAACCAAGGATGTTATAG
Downstream 100 bases:
>100_bases AATAGAACGGAGTGACGGGGCAGCCTGCTGCCCCGCTGATTTCCTATTTAGCGTTTTTTCTTTTTATTGAAATCCAATTC GAAAGCAAACACTGCGCTCT
Product: pyridoxal kinase
Products: NA
Alternate protein names: PN/PL/PM kinase; Pyridoxal kinase; Pyridoxamine kinase; Vitamin B6 kinase [H]
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MQQVSQLQPPQIDVISIQSQVVYGSVGNGIAYRTLLKKGLEALQVPSVLFGCPPYYGAPSGGVIPAEWFSGFLEDLLTRG VMKRTRAVIIGYLGDVGQCHFLHTWLQRVRAINPQIKIYIDPVMGDYGEGVYVDERIVSCYRSPFLQLANGLTPNGFELE QLCGHPLTSREQTQHAAQALLNDTTEWVLVTSAPGVAENDDQIGLLLVSHDEVQSYTHPKIQSKVKGTGDMFTALLVSHL LNGKNLNSAVLTASSEVCDVLTEAAHFGLEEIGSLRALK
Sequences:
>Translated_279_residues MQQVSQLQPPQIDVISIQSQVVYGSVGNGIAYRTLLKKGLEALQVPSVLFGCPPYYGAPSGGVIPAEWFSGFLEDLLTRG VMKRTRAVIIGYLGDVGQCHFLHTWLQRVRAINPQIKIYIDPVMGDYGEGVYVDERIVSCYRSPFLQLANGLTPNGFELE QLCGHPLTSREQTQHAAQALLNDTTEWVLVTSAPGVAENDDQIGLLLVSHDEVQSYTHPKIQSKVKGTGDMFTALLVSHL LNGKNLNSAVLTASSEVCDVLTEAAHFGLEEIGSLRALK >Mature_279_residues MQQVSQLQPPQIDVISIQSQVVYGSVGNGIAYRTLLKKGLEALQVPSVLFGCPPYYGAPSGGVIPAEWFSGFLEDLLTRG VMKRTRAVIIGYLGDVGQCHFLHTWLQRVRAINPQIKIYIDPVMGDYGEGVYVDERIVSCYRSPFLQLANGLTPNGFELE QLCGHPLTSREQTQHAAQALLNDTTEWVLVTSAPGVAENDDQIGLLLVSHDEVQSYTHPKIQSKVKGTGDMFTALLVSHL LNGKNLNSAVLTASSEVCDVLTEAAHFGLEEIGSLRALK
Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxal, pyridoxine, and pyridoxamine as substrates [H]
COG id: COG2240
COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyridoxine kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505701, Length=238, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI1788758, Length=251, Percent_Identity=43.4262948207171, Blast_Score=211, Evalue=4e-56, Organism=Escherichia coli, GI1787924, Length=253, Percent_Identity=28.4584980237154, Blast_Score=107, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17507759, Length=268, Percent_Identity=29.8507462686567, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17507757, Length=278, Percent_Identity=29.136690647482, Blast_Score=92, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6320806, Length=261, Percent_Identity=29.1187739463602, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324354, Length=255, Percent_Identity=29.0196078431373, Blast_Score=81, Evalue=2e-16, Organism=Drosophila melanogaster, GI45553007, Length=240, Percent_Identity=28.3333333333333, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013749 - InterPro: IPR004625 [H]
Pfam domain/function: PF08543 Phos_pyr_kin [H]
EC number: =2.7.1.35 [H]
Molecular weight: Translated: 30434; Mature: 30434
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQVSQLQPPQIDVISIQSQVVYGSVGNGIAYRTLLKKGLEALQVPSVLFGCPPYYGAPS CCCCHHCCCCCEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCC GGVIPAEWFSGFLEDLLTRGVMKRTRAVIIGYLGDVGQCHFLHTWLQRVRAINPQIKIYI CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE DPVMGDYGEGVYVDERIVSCYRSPFLQLANGLTPNGFELEQLCGHPLTSREQTQHAAQAL ECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHH LNDTTEWVLVTSAPGVAENDDQIGLLLVSHDEVQSYTHPKIQSKVKGTGDMFTALLVSHL HCCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH LNGKNLNSAVLTASSEVCDVLTEAAHFGLEEIGSLRALK HCCCCCCHHHEECCHHHHHHHHHHHHHCHHHHHHHCCCC >Mature Secondary Structure MQQVSQLQPPQIDVISIQSQVVYGSVGNGIAYRTLLKKGLEALQVPSVLFGCPPYYGAPS CCCCHHCCCCCEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCC GGVIPAEWFSGFLEDLLTRGVMKRTRAVIIGYLGDVGQCHFLHTWLQRVRAINPQIKIYI CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE DPVMGDYGEGVYVDERIVSCYRSPFLQLANGLTPNGFELEQLCGHPLTSREQTQHAAQAL ECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHH LNDTTEWVLVTSAPGVAENDDQIGLLLVSHDEVQSYTHPKIQSKVKGTGDMFTALLVSHL HCCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH LNGKNLNSAVLTASSEVCDVLTEAAHFGLEEIGSLRALK HCCCCCCHHHEECCHHHHHHHHHHHHHCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA