Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 157370753

GI number: 157370753

Start: 2760046

End: 2760690

Strand: Direct

Name: ycdC [C]

Synonym: Spro_2513

Alternate gene names: 157370753

Gene position: 2760046-2760690 (Clockwise)

Preceding gene: 157370751

Following gene: 157370754

Centisome position: 50.65

GC content: 52.71

Gene sequence:

>645_bases
TTGAACAATGATGATCTCCCCGCGACTAAACGCAAAAACGACCCTGTCGGGCTGAAACAGCGTATTTTCGCTGCGGCGCT
GGCCGAGTTCGCCGAGGCCGGTCTGAAAGGTGCCCGCATGGAAAACATTGCCGAGCACGCGGCCACCACCAAACGCATGG
TGGTTTATCATTTCAAGACCAAGGAATCACTGTACCTGGAGGTGCTGGAACACGTGTATCAGCATATTCGCGCACATGAA
ACCGGGCTGGATCTGCAAGCATTAGCCCCGGTAGCAGCCATGACTCGTTTGGTCGAAGAAAGCTTTAATTACCATGCTGA
ACACCCCGATTTTATCCGGGTTATCTGTATGGAAAACATGATGCGCGGCCAGTATATACGCCAGTCTTCACGCATTAAGG
CGTTAAACCAAAGTGCATTGACCCTGCTGGAAGATATCTTGCAGCGCGGCAAGCAAGAAAAACTGTTCACGCCGGACGCC
AGCGCAGCCGACGTGCATCGCTTGATCAGTAGCCTTTGTTTCCACTACGTTGCCAACCAGTACACCTTTAATGCCCTGTT
TGAAAGCCATCAACCGCCGGAAGATCAGGTTCGTCATATCCGTCAGTTGGCCGTAGTGGCCACCCTGCGCTATCTGGCGC
TGTAA

Upstream 100 bases:

>100_bases
ATATGACGTCGTTCACAAAAGCGCAGCGGCAGCGGATTGTATTACCGGGTCACCCCAGTTACTCTTAACCGGTGTTCCTC
CAAGATAAGTGACTGATGTT

Downstream 100 bases:

>100_bases
GCACTGCTCCCTGGGAGATTGTGATGACCAAAATCACCGACGGCGAAGAAATCACCGCGCCTGATAGTTTAGTGTCCGCC
GCCAGCGGCGATCCCTTTAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR/ArcR Family; TetR-Family Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcriptional Regulator TetR; TetR-Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNNDDLPATKRKNDPVGLKQRIFAAALAEFAEAGLKGARMENIAEHAATTKRMVVYHFKTKESLYLEVLEHVYQHIRAHE
TGLDLQALAPVAAMTRLVEESFNYHAEHPDFIRVICMENMMRGQYIRQSSRIKALNQSALTLLEDILQRGKQEKLFTPDA
SAADVHRLISSLCFHYVANQYTFNALFESHQPPEDQVRHIRQLAVVATLRYLAL

Sequences:

>Translated_214_residues
MNNDDLPATKRKNDPVGLKQRIFAAALAEFAEAGLKGARMENIAEHAATTKRMVVYHFKTKESLYLEVLEHVYQHIRAHE
TGLDLQALAPVAAMTRLVEESFNYHAEHPDFIRVICMENMMRGQYIRQSSRIKALNQSALTLLEDILQRGKQEKLFTPDA
SAADVHRLISSLCFHYVANQYTFNALFESHQPPEDQVRHIRQLAVVATLRYLAL
>Mature_214_residues
MNNDDLPATKRKNDPVGLKQRIFAAALAEFAEAGLKGARMENIAEHAATTKRMVVYHFKTKESLYLEVLEHVYQHIRAHE
TGLDLQALAPVAAMTRLVEESFNYHAEHPDFIRVICMENMMRGQYIRQSSRIKALNQSALTLLEDILQRGKQEKLFTPDA
SAADVHRLISSLCFHYVANQYTFNALFESHQPPEDQVRHIRQLAVVATLRYLAL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787249, Length=155, Percent_Identity=28.3870967741935, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24444; Mature: 24444

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNDDLPATKRKNDPVGLKQRIFAAALAEFAEAGLKGARMENIAEHAATTKRMVVYHFKT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC
KESLYLEVLEHVYQHIRAHETGLDLQALAPVAAMTRLVEESFNYHAEHPDFIRVICMENM
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MRGQYIRQSSRIKALNQSALTLLEDILQRGKQEKLFTPDASAADVHRLISSLCFHYVANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YTFNALFESHQPPEDQVRHIRQLAVVATLRYLAL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNNDDLPATKRKNDPVGLKQRIFAAALAEFAEAGLKGARMENIAEHAATTKRMVVYHFKT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC
KESLYLEVLEHVYQHIRAHETGLDLQALAPVAAMTRLVEESFNYHAEHPDFIRVICMENM
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MRGQYIRQSSRIKALNQSALTLLEDILQRGKQEKLFTPDASAADVHRLISSLCFHYVANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YTFNALFESHQPPEDQVRHIRQLAVVATLRYLAL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA