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The map label for this gene is ybcK [H]

Identifier: 157369787

GI number: 157369787

Start: 1681671

End: 1683182

Strand: Reverse

Name: ybcK [H]

Synonym: Spro_1544

Alternate gene names: 157369787

Gene position: 1683182-1681671 (Counterclockwise)

Preceding gene: 157369789

Following gene: 157369786

Centisome position: 30.89

GC content: 46.16

Gene sequence:

>1512_bases
ATGCCACAACGGAACAATGGGATCGCCTACAGTTATGTTCGTTTTTCAAGCAAGCGACAAGAACTGGGCGACAGTCTGCG
CAGACAGACGGAAATGGCGGAAGAATACGCCATCAAAAATGGACTTAAACTCTCCAGCAAAAACTTCCAAGACCTTGGTA
TCAGCGCCTTCCGGGAAGGTAAACGTGCATCTCTGGTTGATATGCTTGCCGCCATTGAAGAAGGCCAGATTACTGCTGGA
TCAACAATCATTATCGAAGCATTAGACCGGCTTTCACGCCGTGGTATCGATGCAACGCTGGAAACGGTGAAAGAGATTCT
ACGCAAAGACGTTCAGGTAGTCAGCCTTTCCGATGGCTTGCTGTTAACCAAAAACAGTCTGAATGATCTGCAAAGTGTCA
TTCGCATAGCGGTAGCAGCCGATCTGGCTCACAAAGAGTCAGAACGTAAAGCGATACGCCTGCGTGAAACCAAAGGACAA
CAACGGCAAGCAGCACTTAGCGGGAAACCTATCAATAAAATCCTGCCTTTTTGGCTACAGCGTACCGAAACCGGTTATGC
CTTCAGCGATAAAGCAGGAGTCGCCAGGCAAATCGTTCAGCTAAAGCAAGAAGGCAAAGGCAGCAATATGATAGCAAAAG
CGCTCAATAAGCTGGGTATTGCCGGAGTCAGAACAGCACAGTGGAATCATGCCTCTATAACCAAAATGCTAAAAAATCCT
GCGCTGTATGGTGCCTATCAGACGGGTGAAACGACCAAGGACAGGGAACTGATCAAACTAGAACTTGTTGAAGCGTACTA
CCCTGCCCTGATCAGCAAAGAAGAATGGCTGTTGCTGCAATCAGACCAAAGCAAATCCAAACGAGGACGCCGTAGCGCTG
ATAACCCTTATAGTGGCCTATTACGCTGTGAATGCGGTGGTGCATTAGTAAAACGAAAGCATACCGTAAAAGAGAAACTG
TACGTTTATCATGGCTGCTTGAATGCCAAGGATGGTCGCTGTACGCAAAATATTTCAATCAAAGGATTAGATGGCGCACT
AACCACTATTCTTGGCCGATTAGAGTTTAAGAAAAAACAGACGCTGGACCAATCCATTCATCAAGAAAGGCAACAACTTG
AGGCTCGGATTAATGATCTGAACAGCAAATTGCAAGTTCTGGATGACATCCCTTTATCCGTCATTAAAAGCATCGGCACA
ATGGAATCCCGACTAAAAGAGATTACTGAGCAGATAGCAAAGGACGAGCGCGAGCAACGTGGCATTGAAGCCGTTAAAAG
TGAGAAGCTTTCCAGCATTACGGATGGTTTAGAACTTAACCTGTTGCTGAAACGCGTTTTAAAAAGCATCACTGTTATCC
GCTCAGGTAATGGCTGGGCGGTGAAAGTTCTCCACCTGTCTGGCCATAAGCAAAACTTCCTGATGGTTGATGGCGAGATC
AAGTTCTTGAGCGATACCATTGCATTGCAAAATCTATTGGCTGGATTTCGCGAAGCAACGGAGAATAATTAG

Upstream 100 bases:

>100_bases
GAGATGTTTTCAAACAGCGGCTTACTGCCAAACTGCATAGTGATATTGTTACTTAATAGCAAAGGATTTACTCTTATAGA
AACGTGATTTTGGACACATT

Downstream 100 bases:

>100_bases
AATTATCATAACGTAATGTACTCCTCCTGTAGGCTGGATATAATTATTCGCAGGAGGAGAACATGACCATTTTTGCCTAT
ACCCGTGTATCAAAAGCCGA

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MPQRNNGIAYSYVRFSSKRQELGDSLRRQTEMAEEYAIKNGLKLSSKNFQDLGISAFREGKRASLVDMLAAIEEGQITAG
STIIIEALDRLSRRGIDATLETVKEILRKDVQVVSLSDGLLLTKNSLNDLQSVIRIAVAADLAHKESERKAIRLRETKGQ
QRQAALSGKPINKILPFWLQRTETGYAFSDKAGVARQIVQLKQEGKGSNMIAKALNKLGIAGVRTAQWNHASITKMLKNP
ALYGAYQTGETTKDRELIKLELVEAYYPALISKEEWLLLQSDQSKSKRGRRSADNPYSGLLRCECGGALVKRKHTVKEKL
YVYHGCLNAKDGRCTQNISIKGLDGALTTILGRLEFKKKQTLDQSIHQERQQLEARINDLNSKLQVLDDIPLSVIKSIGT
MESRLKEITEQIAKDEREQRGIEAVKSEKLSSITDGLELNLLLKRVLKSITVIRSGNGWAVKVLHLSGHKQNFLMVDGEI
KFLSDTIALQNLLAGFREATENN

Sequences:

>Translated_503_residues
MPQRNNGIAYSYVRFSSKRQELGDSLRRQTEMAEEYAIKNGLKLSSKNFQDLGISAFREGKRASLVDMLAAIEEGQITAG
STIIIEALDRLSRRGIDATLETVKEILRKDVQVVSLSDGLLLTKNSLNDLQSVIRIAVAADLAHKESERKAIRLRETKGQ
QRQAALSGKPINKILPFWLQRTETGYAFSDKAGVARQIVQLKQEGKGSNMIAKALNKLGIAGVRTAQWNHASITKMLKNP
ALYGAYQTGETTKDRELIKLELVEAYYPALISKEEWLLLQSDQSKSKRGRRSADNPYSGLLRCECGGALVKRKHTVKEKL
YVYHGCLNAKDGRCTQNISIKGLDGALTTILGRLEFKKKQTLDQSIHQERQQLEARINDLNSKLQVLDDIPLSVIKSIGT
MESRLKEITEQIAKDEREQRGIEAVKSEKLSSITDGLELNLLLKRVLKSITVIRSGNGWAVKVLHLSGHKQNFLMVDGEI
KFLSDTIALQNLLAGFREATENN
>Mature_502_residues
PQRNNGIAYSYVRFSSKRQELGDSLRRQTEMAEEYAIKNGLKLSSKNFQDLGISAFREGKRASLVDMLAAIEEGQITAGS
TIIIEALDRLSRRGIDATLETVKEILRKDVQVVSLSDGLLLTKNSLNDLQSVIRIAVAADLAHKESERKAIRLRETKGQQ
RQAALSGKPINKILPFWLQRTETGYAFSDKAGVARQIVQLKQEGKGSNMIAKALNKLGIAGVRTAQWNHASITKMLKNPA
LYGAYQTGETTKDRELIKLELVEAYYPALISKEEWLLLQSDQSKSKRGRRSADNPYSGLLRCECGGALVKRKHTVKEKLY
VYHGCLNAKDGRCTQNISIKGLDGALTTILGRLEFKKKQTLDQSIHQERQQLEARINDLNSKLQVLDDIPLSVIKSIGTM
ESRLKEITEQIAKDEREQRGIEAVKSEKLSSITDGLELNLLLKRVLKSITVIRSGNGWAVKVLHLSGHKQNFLMVDGEIK
FLSDTIALQNLLAGFREATENN

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=452, Percent_Identity=28.7610619469027, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 56181; Mature: 56050

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRNNGIAYSYVRFSSKRQELGDSLRRQTEMAEEYAIKNGLKLSSKNFQDLGISAFREG
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCHHHHHCC
KRASLVDMLAAIEEGQITAGSTIIIEALDRLSRRGIDATLETVKEILRKDVQVVSLSDGL
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCE
LLTKNSLNDLQSVIRIAVAADLAHKESERKAIRLRETKGQQRQAALSGKPINKILPFWLQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
RTETGYAFSDKAGVARQIVQLKQEGKGSNMIAKALNKLGIAGVRTAQWNHASITKMLKNP
HCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCC
ALYGAYQTGETTKDRELIKLELVEAYYPALISKEEWLLLQSDQSKSKRGRRSADNPYSGL
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCE
LRCECGGALVKRKHTVKEKLYVYHGCLNAKDGRCTQNISIKGLDGALTTILGRLEFKKKQ
EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
TLDQSIHQERQQLEARINDLNSKLQVLDDIPLSVIKSIGTMESRLKEITEQIAKDEREQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIEAVKSEKLSSITDGLELNLLLKRVLKSITVIRSGNGWAVKVLHLSGHKQNFLMVDGEI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCEEEEEEEECCCCCCEEEECCCH
KFLSDTIALQNLLAGFREATENN
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PQRNNGIAYSYVRFSSKRQELGDSLRRQTEMAEEYAIKNGLKLSSKNFQDLGISAFREG
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCHHHHHCC
KRASLVDMLAAIEEGQITAGSTIIIEALDRLSRRGIDATLETVKEILRKDVQVVSLSDGL
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCE
LLTKNSLNDLQSVIRIAVAADLAHKESERKAIRLRETKGQQRQAALSGKPINKILPFWLQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
RTETGYAFSDKAGVARQIVQLKQEGKGSNMIAKALNKLGIAGVRTAQWNHASITKMLKNP
HCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCC
ALYGAYQTGETTKDRELIKLELVEAYYPALISKEEWLLLQSDQSKSKRGRRSADNPYSGL
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCE
LRCECGGALVKRKHTVKEKLYVYHGCLNAKDGRCTQNISIKGLDGALTTILGRLEFKKKQ
EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
TLDQSIHQERQQLEARINDLNSKLQVLDDIPLSVIKSIGTMESRLKEITEQIAKDEREQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIEAVKSEKLSSITDGLELNLLLKRVLKSITVIRSGNGWAVKVLHLSGHKQNFLMVDGEI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCEEEEEEEECCCCCCEEEECCCH
KFLSDTIALQNLLAGFREATENN
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]