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The map label for this gene is ygbM [H]

Identifier: 157369732

GI number: 157369732

Start: 1623809

End: 1624585

Strand: Reverse

Name: ygbM [H]

Synonym: Spro_1489

Alternate gene names: 157369732

Gene position: 1624585-1623809 (Counterclockwise)

Preceding gene: 157369733

Following gene: 157369731

Centisome position: 29.82

GC content: 58.56

Gene sequence:

>777_bases
ATGCCAAAATTTGCTGCCAATTTATCGATGATGTTTACCGAACTGCCGTTTCTGGAGCGATTCGAGGCTGCGGCCGCCGA
AGGGTTCACCGCGGTGGAGTTCCTGTTCCCCTATGACTATCCGGCCGAGTTACTGGCGGAAAAGCTGCGCCGCCACGGCC
TGCAGCAGGTGCTGTTTAATACCGCCCCCGGTAATGCCGATGCCGGAGAATGGGGGCTGGCGGCGGTTCCTGGCCGCGAA
CAGGCCGCGCGTGCCGATATCGACAAAGCTCTGGCCTATGCCATAGCGCTGAACTGCCCCAGCGTACACGTCATGGCCGG
TGTGGTTCCGCCCGGCGAAGATTGGCAACGCTACCGCGATACCTTTATCGGCAATATCCGCTACGCCGCCGACAGCTTCG
CCCAACACGGCATCAAGGTACTGATCGAAGCGCTCAGCCCGCAGGTTAAGCCCAATTATCTGTTCTCCAGCCAGCATCAG
GCAGCAAAACTGGTCGAAGCCGTCGATCGCCCGAATGTGTTTATCCAGTTCGATTTTTTCCATGCGCAGTTGGTCGACGG
CAATATCAGCGGTCTGATGGCTGCACTGGCCGGGCGCTATGCCCATATTCAGATAGCTTCAGTACCAGAACGCCATGAAC
CGGACGACGGCGAACTCAATTATCCCTGGCTGTTCGCCCAACTGGACCGCCTCGGTTATACCGGCTGGATTGGCTGCGAG
TACAAACCGCGTGGCGATACCCGGGCCGGGCTGGGGTGGATAAGGCCTTATCTGTAA

Upstream 100 bases:

>100_bases
CGAAGAGATGGAGGATGCGGCGAAGCTGATTTTCACCCTCGGCGAACGCCCGATTCGTTATTTGACCGATGATGAGATTG
CCGAGCTACGGAGCTGAATC

Downstream 100 bases:

>100_bases
CAGGCCGATCCTGCGTACCTGACAGCAACAATATAAAAATTAAACGCACCCGTATCGCCAGCCGGCGATCGCGGTGCCTG
ACTCTTACCCGATTAAAGGC

Product: hydroxypyruvate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPKFAANLSMMFTELPFLERFEAAAAEGFTAVEFLFPYDYPAELLAEKLRRHGLQQVLFNTAPGNADAGEWGLAAVPGRE
QAARADIDKALAYAIALNCPSVHVMAGVVPPGEDWQRYRDTFIGNIRYAADSFAQHGIKVLIEALSPQVKPNYLFSSQHQ
AAKLVEAVDRPNVFIQFDFFHAQLVDGNISGLMAALAGRYAHIQIASVPERHEPDDGELNYPWLFAQLDRLGYTGWIGCE
YKPRGDTRAGLGWIRPYL

Sequences:

>Translated_258_residues
MPKFAANLSMMFTELPFLERFEAAAAEGFTAVEFLFPYDYPAELLAEKLRRHGLQQVLFNTAPGNADAGEWGLAAVPGRE
QAARADIDKALAYAIALNCPSVHVMAGVVPPGEDWQRYRDTFIGNIRYAADSFAQHGIKVLIEALSPQVKPNYLFSSQHQ
AAKLVEAVDRPNVFIQFDFFHAQLVDGNISGLMAALAGRYAHIQIASVPERHEPDDGELNYPWLFAQLDRLGYTGWIGCE
YKPRGDTRAGLGWIRPYL
>Mature_257_residues
PKFAANLSMMFTELPFLERFEAAAAEGFTAVEFLFPYDYPAELLAEKLRRHGLQQVLFNTAPGNADAGEWGLAAVPGREQ
AARADIDKALAYAIALNCPSVHVMAGVVPPGEDWQRYRDTFIGNIRYAADSFAQHGIKVLIEALSPQVKPNYLFSSQHQA
AKLVEAVDRPNVFIQFDFFHAQLVDGNISGLMAALAGRYAHIQIASVPERHEPDDGELNYPWLFAQLDRLGYTGWIGCEY
KPRGDTRAGLGWIRPYL

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=44.6564885496183, Blast_Score=211, Evalue=7e-55,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=42.798353909465, Blast_Score=180, Evalue=1e-45,
Organism=Escherichia coli, GI1789095, Length=253, Percent_Identity=67.1936758893281, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1786718, Length=257, Percent_Identity=41.2451361867704, Blast_Score=211, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17552022, Length=253, Percent_Identity=37.1541501976285, Blast_Score=175, Evalue=3e-44,
Organism=Drosophila melanogaster, GI17530883, Length=256, Percent_Identity=35.9375, Blast_Score=164, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 28703; Mature: 28572

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFAANLSMMFTELPFLERFEAAAAEGFTAVEFLFPYDYPAELLAEKLRRHGLQQVLFN
CCCHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
TAPGNADAGEWGLAAVPGREQAARADIDKALAYAIALNCPSVHVMAGVVPPGEDWQRYRD
CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
TFIGNIRYAADSFAQHGIKVLIEALSPQVKPNYLFSSQHQAAKLVEAVDRPNVFIQFDFF
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEEEE
HAQLVDGNISGLMAALAGRYAHIQIASVPERHEPDDGELNYPWLFAQLDRLGYTGWIGCE
EEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCE
YKPRGDTRAGLGWIRPYL
ECCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
PKFAANLSMMFTELPFLERFEAAAAEGFTAVEFLFPYDYPAELLAEKLRRHGLQQVLFN
CCHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
TAPGNADAGEWGLAAVPGREQAARADIDKALAYAIALNCPSVHVMAGVVPPGEDWQRYRD
CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
TFIGNIRYAADSFAQHGIKVLIEALSPQVKPNYLFSSQHQAAKLVEAVDRPNVFIQFDFF
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEEEE
HAQLVDGNISGLMAALAGRYAHIQIASVPERHEPDDGELNYPWLFAQLDRLGYTGWIGCE
EEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCE
YKPRGDTRAGLGWIRPYL
ECCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]