Click here to switch to the map view.

The map label for this gene is yjiR [H]

Identifier: 157369683

GI number: 157369683

Start: 1572206

End: 1573654

Strand: Reverse

Name: yjiR [H]

Synonym: Spro_1440

Alternate gene names: 157369683

Gene position: 1573654-1572206 (Counterclockwise)

Preceding gene: 157369686

Following gene: 157369682

Centisome position: 28.88

GC content: 59.01

Gene sequence:

>1449_bases
ATGACACGCTACGCCACGCTGGCCGCGATCCTCAGCCAACGCATTGAACAGGGGCTTTATCCGGCAGGCGATCGCCTGCC
TTCGGTGCGTATGCTAAGCCAGGAGCACGGCGTCAGCATCAGCACGGTGCAGCAGGCTTACCGTCTGCTGGAAGAGGGAC
AACTGGTAGAGGCGCGGCCGAAGTCGGGTTATTTTGTGCAGACGCGGCGGACTTTGGCCGAACTGCCCACCGTGACCCGC
CCGGTGCAGCGACCGGTGGATATTTCGCAGTGGGAGCAGGTACTGGAGCTGATCCGCAACAAGCCGCGCGAAGACCTGAT
TCAACTGGGCAGAGGCATGCCGGATATCAGCGAACCCACGCTGAAACCCCTGATGAAAGCGCTGGGGCACACGGGCCGCC
ACGGCGACCTGCGTAGCCTGCACTACGACAGCATTCAGGGCGTGCTGGGGTTGCGTGAGCAAATCGCCCGCCTGCTGCTG
GATTCCGGTTGCCAGATTGATGCCGACCAGTTGGTGATCACCACCGGTTGTCACGAAGCCCTGTCCGCCGGGCTGCGCGC
CGTATGCCAACCAGGGGATATTGTGGCGGTTGACTCCCCCTGTTTTCACGGCACCATGCAGACCTTGAAAGGCTTGGGCA
TGAGAGCGCTGGAGATCCCCACAGATCCGCTGACCGGCATCAGCCTGGAGGCGCTGGAATTGGCGCTGGAACAGTGGCCG
GTCAAAACCATCCTGTTAACCCCCAACTGCAATAACCCGCTGGGTTACATCATGCCGGAGGCGCGCAAAAAGCGTTTGCT
GACGCTGGCACAGCGCTTTGACGTGACGATCATTGAAGATGACGTGTATGGGGATATCGCCTATCAATATCCTCGCCCAC
GCACCATAAAATCCTTCGACGAAGATGGCCGGGTGCTGCTGTGCAGCTCCTTTTCAAAAACGCTGGCCCCCGGTCTGCGC
ATCGGCTGGATCGCCCCCGGGCGCTATCTGGAGCGCGTGCTGCACATGAAATATATCGGTACCGGCTCCACGGCTACCCA
GCCGCAGCTGGCGATTGCCGAATTTATTCGGCACGGCCACTACCTGCAACACCTGCGGCGTATGCGTTCCCGCTACCAAC
AAAACCGCGACGTGATGACCGGTTGGATTATGAAATATTTTCCGCCCGGTACCCGCGTCAGCCAACCGCGCGGCGGCTTT
ATGCTGTGGATCGAGCTGGATGAAGAGTTCGATACCCTGCGGCTGAACCGTCATCTGGAGAAGCAGGGTGTACAGATCGC
GGTCGGCAGTATTTTTTCCGCCTCCGGCAAGTACCGTAACTGTCTGCGCATCAATTATGCCTATGCACCTAAACTGATGC
CCGAGATTGAACAAGCGGTATTGCGGGTCGGCGCAACCATCCAACAGTTAATGCTGACGTTCGAAAACACATTGGCGCAA
TCGGATTAA

Upstream 100 bases:

>100_bases
ATTTTTTCCATACAAAAGCTGTCTCCGCCTGTCTGAATGGTCTAATTTAACTTCATCTGTACCGGTCTTTTCCTCACTCA
CTCTTATTTGAGGCATCTGT

Downstream 100 bases:

>100_bases
CAGTTGGCGGGATCGGATTATCCGCACAGCGTCTAACCTTCTAGAGTGAGACCTCACCCCATGAGCAGGTAAGGAAGGTT
TTATGTCGCAATCTCAGGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTRYATLAAILSQRIEQGLYPAGDRLPSVRMLSQEHGVSISTVQQAYRLLEEGQLVEARPKSGYFVQTRRTLAELPTVTR
PVQRPVDISQWEQVLELIRNKPREDLIQLGRGMPDISEPTLKPLMKALGHTGRHGDLRSLHYDSIQGVLGLREQIARLLL
DSGCQIDADQLVITTGCHEALSAGLRAVCQPGDIVAVDSPCFHGTMQTLKGLGMRALEIPTDPLTGISLEALELALEQWP
VKTILLTPNCNNPLGYIMPEARKKRLLTLAQRFDVTIIEDDVYGDIAYQYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWIAPGRYLERVLHMKYIGTGSTATQPQLAIAEFIRHGHYLQHLRRMRSRYQQNRDVMTGWIMKYFPPGTRVSQPRGGF
MLWIELDEEFDTLRLNRHLEKQGVQIAVGSIFSASGKYRNCLRINYAYAPKLMPEIEQAVLRVGATIQQLMLTFENTLAQ
SD

Sequences:

>Translated_482_residues
MTRYATLAAILSQRIEQGLYPAGDRLPSVRMLSQEHGVSISTVQQAYRLLEEGQLVEARPKSGYFVQTRRTLAELPTVTR
PVQRPVDISQWEQVLELIRNKPREDLIQLGRGMPDISEPTLKPLMKALGHTGRHGDLRSLHYDSIQGVLGLREQIARLLL
DSGCQIDADQLVITTGCHEALSAGLRAVCQPGDIVAVDSPCFHGTMQTLKGLGMRALEIPTDPLTGISLEALELALEQWP
VKTILLTPNCNNPLGYIMPEARKKRLLTLAQRFDVTIIEDDVYGDIAYQYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWIAPGRYLERVLHMKYIGTGSTATQPQLAIAEFIRHGHYLQHLRRMRSRYQQNRDVMTGWIMKYFPPGTRVSQPRGGF
MLWIELDEEFDTLRLNRHLEKQGVQIAVGSIFSASGKYRNCLRINYAYAPKLMPEIEQAVLRVGATIQQLMLTFENTLAQ
SD
>Mature_481_residues
TRYATLAAILSQRIEQGLYPAGDRLPSVRMLSQEHGVSISTVQQAYRLLEEGQLVEARPKSGYFVQTRRTLAELPTVTRP
VQRPVDISQWEQVLELIRNKPREDLIQLGRGMPDISEPTLKPLMKALGHTGRHGDLRSLHYDSIQGVLGLREQIARLLLD
SGCQIDADQLVITTGCHEALSAGLRAVCQPGDIVAVDSPCFHGTMQTLKGLGMRALEIPTDPLTGISLEALELALEQWPV
KTILLTPNCNNPLGYIMPEARKKRLLTLAQRFDVTIIEDDVYGDIAYQYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLRI
GWIAPGRYLERVLHMKYIGTGSTATQPQLAIAEFIRHGHYLQHLRRMRSRYQQNRDVMTGWIMKYFPPGTRVSQPRGGFM
LWIELDEEFDTLRLNRHLEKQGVQIAVGSIFSASGKYRNCLRINYAYAPKLMPEIEQAVLRVGATIQQLMLTFENTLAQS
D

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=359, Percent_Identity=28.133704735376, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI33469970, Length=359, Percent_Identity=28.133704735376, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4507369, Length=235, Percent_Identity=24.6808510638298, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1790797, Length=471, Percent_Identity=55.6263269639066, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI1787710, Length=470, Percent_Identity=34.2553191489362, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI1788722, Length=322, Percent_Identity=23.6024844720497, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=383, Percent_Identity=22.1932114882507, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=317, Percent_Identity=26.813880126183, Blast_Score=97, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6321000, Length=438, Percent_Identity=24.2009132420091, Blast_Score=90, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6321929, Length=436, Percent_Identity=21.5596330275229, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21356535, Length=383, Percent_Identity=22.4543080939948, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI18859735, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54328; Mature: 54197

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYATLAAILSQRIEQGLYPAGDRLPSVRMLSQEHGVSISTVQQAYRLLEEGQLVEARP
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCC
KSGYFVQTRRTLAELPTVTRPVQRPVDISQWEQVLELIRNKPREDLIQLGRGMPDISEPT
CCCCEEHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHH
LKPLMKALGHTGRHGDLRSLHYDSIQGVLGLREQIARLLLDSGCQIDADQLVITTGCHEA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
LSAGLRAVCQPGDIVAVDSPCFHGTMQTLKGLGMRALEIPTDPLTGISLEALELALEQWP
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
VKTILLTPNCNNPLGYIMPEARKKRLLTLAQRFDVTIIEDDVYGDIAYQYPRPRTIKSFD
CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWIAPGRYLERVLHMKYIGTGSTATQPQLAIAEFIRHGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCH
YLQHLRRMRSRYQQNRDVMTGWIMKYFPPGTRVSQPRGGFMLWIELDEEFDTLRLNRHLE
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH
KQGVQIAVGSIFSASGKYRNCLRINYAYAPKLMPEIEQAVLRVGATIQQLMLTFENTLAQ
HCCCEEEECHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SD
CC
>Mature Secondary Structure 
TRYATLAAILSQRIEQGLYPAGDRLPSVRMLSQEHGVSISTVQQAYRLLEEGQLVEARP
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCC
KSGYFVQTRRTLAELPTVTRPVQRPVDISQWEQVLELIRNKPREDLIQLGRGMPDISEPT
CCCCEEHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHH
LKPLMKALGHTGRHGDLRSLHYDSIQGVLGLREQIARLLLDSGCQIDADQLVITTGCHEA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
LSAGLRAVCQPGDIVAVDSPCFHGTMQTLKGLGMRALEIPTDPLTGISLEALELALEQWP
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
VKTILLTPNCNNPLGYIMPEARKKRLLTLAQRFDVTIIEDDVYGDIAYQYPRPRTIKSFD
CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWIAPGRYLERVLHMKYIGTGSTATQPQLAIAEFIRHGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCH
YLQHLRRMRSRYQQNRDVMTGWIMKYFPPGTRVSQPRGGFMLWIELDEEFDTLRLNRHLE
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH
KQGVQIAVGSIFSASGKYRNCLRINYAYAPKLMPEIEQAVLRVGATIQQLMLTFENTLAQ
HCCCEEEECHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]