Click here to switch to the map view.

The map label for this gene is ybaE [H]

Identifier: 157369346

GI number: 157369346

Start: 1213688

End: 1215415

Strand: Reverse

Name: ybaE [H]

Synonym: Spro_1103

Alternate gene names: 157369346

Gene position: 1215415-1213688 (Counterclockwise)

Preceding gene: 157369348

Following gene: 157369345

Centisome position: 22.31

GC content: 59.43

Gene sequence:

>1728_bases
ATGCGCCTGACCCACCGCCTCAGCCAGTATCAACGCCTGTACCAGCAGCTCGGCGGCACGCCGGTCGCCATTACCGTTGG
CGAACTGGCAGCGATGTTCTTTTGCAGCGAACGCCATGCCCGCACGCTGGTGCAACAACTGCAGGATCAGGGCTGGCTGA
GCTGGCAGTCACAGCCCGGGCGCGGCAAACGTGCGCACCTGCACTGCCTGAAAACGCCGGATGAACTACGTGCAGCCCAT
CTGCAAAGGTTGCTGAAGGAAGGCGATCATCAGGGAGCGCTGGAAATGGCGCAGTTGGATCCGCAACATTTGCAGGAGCT
GCTCAGCCCACATCTTGGGGGGCAATGGCAAGCCGGCAGCCCAACGTTGCGTATCCCCTACTACCGTACGCTCGAATCGC
TGGATCCGCTGACCCTGACCGGGCGCGCCGAACAGCATTTGGTCGCCACCCTGCATGCCGGCCTGACTCGCTTTAATACC
GGTAACTCCGAGCCGCAATCAGATCTGGCCCATCATTGGCAAATCAGCCATGACGGCCTGCGCTGGCAGTTCTTTCTACG
CAGCCAATTGCGCTGGCACAACGGTGAGCCGCTGACCGGCCAGCAACTGCTGCAAACGCTGGAAAAACTGCAGCACCATC
CTCGCAGTCAACCGAGCCTGGCCAACGTTGCCGCTATCAGCCTTCCCCATGCGCTGTGCCTGCAGTTTGATTTACAGTGT
CCGGACTACTGGTTGGCGCACCGGCTGGCGGAGTTGCCTTGTCTGCTGACCCATCCGGAGGCTTCGGGCATGGGAGCCGG
CCCGTTTAAGCTGACGCTGAACCAACCGCACCTGGTCCGGCTGGAGCAACACCCGTTTTACCATTTGCAACATCCTTTTC
TTGAGAGCATCGAGTATTGGATCACACCCGAGTTGAACACCGGTGAGGCTTATACCAGTTGCCAGCATCCGGTACGCATT
ACCCTCGGTCAGCAGGAAGAGATAGCATTAGCGCGGCCGGTACAGCGCAGCATGAGTCTGGGTTGGTGCTATCTGGCGGT
AAATTTGAAGCACGGCGTGCTCAGCGAGGCTCAGGGAAAAAAACTGCTGATGCTGATCCAGCAATCCGGCCTGTTGGCCA
ATCTGCCGGTGCCCAACAGCGTCATCACCCCCAGTAGTGAGATGCTGCCCGGCTGGGCAATTCCACAACATCAGGCCGCT
GAGGATATTGCCCTGCCCGCTAAATTGACGCTGTTGTATCGGCCCCCGGTGGAACTGGAGACGGTCACGGTGGCCTTGCA
GCAACTGTTGGCGCAACACGGCTGCGAGCTGGAGTTGCGCTACTACGCAGGTAAACGCTGGCAAAGCGCCGAACAAATCG
AACAGGCCGACCTGCTGCTGGCGGATAATCTGATTGGAGAGTCACCGGAGGCCACGCTGGAAAGCTGGCTACGGCAAGAT
ACGCTGTGGCGCGGTATCCTGCCCGACGCTCGCTGGCAGCACCAGCAACAAACGCTGCAACAGATCCAGCAGCTCCCGGC
GCAGCAAACGCGTTACCAGCAATTGAAAGACTATTATCAGCAGCTTATGGCGGCGGCGATCATCACTCCGCTGTTTCACT
ATCAGTATCAAATCAGCGCGCCGCCGCGCATTCATGGCGTCACCCTGACCGCCCACGGTTGGTTCGATTTCTGTCAGGCC
TGGCTGCCACCGCCGGTAGAAAATACCACGCCTCCATCAACCGACTGA

Upstream 100 bases:

>100_bases
ACCTCGTGAATGTGAACGCGATTACAGTCCGTGCAGTATGGGATGGTATTTACGGAAGTAATAGTGAACAATTCTGGAAA
ACTGTTCCGGATTTCCCATC

Downstream 100 bases:

>100_bases
ATTTGCCCGGCCCAGCGGTATGCCACCATTTCTGCTACCATTGCTGCCGCAACGCATTTTTATCTTACCGCCCGAATGTG
TATCGGGTAGGGTCTCAGCA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MRLTHRLSQYQRLYQQLGGTPVAITVGELAAMFFCSERHARTLVQQLQDQGWLSWQSQPGRGKRAHLHCLKTPDELRAAH
LQRLLKEGDHQGALEMAQLDPQHLQELLSPHLGGQWQAGSPTLRIPYYRTLESLDPLTLTGRAEQHLVATLHAGLTRFNT
GNSEPQSDLAHHWQISHDGLRWQFFLRSQLRWHNGEPLTGQQLLQTLEKLQHHPRSQPSLANVAAISLPHALCLQFDLQC
PDYWLAHRLAELPCLLTHPEASGMGAGPFKLTLNQPHLVRLEQHPFYHLQHPFLESIEYWITPELNTGEAYTSCQHPVRI
TLGQQEEIALARPVQRSMSLGWCYLAVNLKHGVLSEAQGKKLLMLIQQSGLLANLPVPNSVITPSSEMLPGWAIPQHQAA
EDIALPAKLTLLYRPPVELETVTVALQQLLAQHGCELELRYYAGKRWQSAEQIEQADLLLADNLIGESPEATLESWLRQD
TLWRGILPDARWQHQQQTLQQIQQLPAQQTRYQQLKDYYQQLMAAAIITPLFHYQYQISAPPRIHGVTLTAHGWFDFCQA
WLPPPVENTTPPSTD

Sequences:

>Translated_575_residues
MRLTHRLSQYQRLYQQLGGTPVAITVGELAAMFFCSERHARTLVQQLQDQGWLSWQSQPGRGKRAHLHCLKTPDELRAAH
LQRLLKEGDHQGALEMAQLDPQHLQELLSPHLGGQWQAGSPTLRIPYYRTLESLDPLTLTGRAEQHLVATLHAGLTRFNT
GNSEPQSDLAHHWQISHDGLRWQFFLRSQLRWHNGEPLTGQQLLQTLEKLQHHPRSQPSLANVAAISLPHALCLQFDLQC
PDYWLAHRLAELPCLLTHPEASGMGAGPFKLTLNQPHLVRLEQHPFYHLQHPFLESIEYWITPELNTGEAYTSCQHPVRI
TLGQQEEIALARPVQRSMSLGWCYLAVNLKHGVLSEAQGKKLLMLIQQSGLLANLPVPNSVITPSSEMLPGWAIPQHQAA
EDIALPAKLTLLYRPPVELETVTVALQQLLAQHGCELELRYYAGKRWQSAEQIEQADLLLADNLIGESPEATLESWLRQD
TLWRGILPDARWQHQQQTLQQIQQLPAQQTRYQQLKDYYQQLMAAAIITPLFHYQYQISAPPRIHGVTLTAHGWFDFCQA
WLPPPVENTTPPSTD
>Mature_575_residues
MRLTHRLSQYQRLYQQLGGTPVAITVGELAAMFFCSERHARTLVQQLQDQGWLSWQSQPGRGKRAHLHCLKTPDELRAAH
LQRLLKEGDHQGALEMAQLDPQHLQELLSPHLGGQWQAGSPTLRIPYYRTLESLDPLTLTGRAEQHLVATLHAGLTRFNT
GNSEPQSDLAHHWQISHDGLRWQFFLRSQLRWHNGEPLTGQQLLQTLEKLQHHPRSQPSLANVAAISLPHALCLQFDLQC
PDYWLAHRLAELPCLLTHPEASGMGAGPFKLTLNQPHLVRLEQHPFYHLQHPFLESIEYWITPELNTGEAYTSCQHPVRI
TLGQQEEIALARPVQRSMSLGWCYLAVNLKHGVLSEAQGKKLLMLIQQSGLLANLPVPNSVITPSSEMLPGWAIPQHQAA
EDIALPAKLTLLYRPPVELETVTVALQQLLAQHGCELELRYYAGKRWQSAEQIEQADLLLADNLIGESPEATLESWLRQD
TLWRGILPDARWQHQQQTLQQIQQLPAQQTRYQQLKDYYQQLMAAAIITPLFHYQYQISAPPRIHGVTLTAHGWFDFCQA
WLPPPVENTTPPSTD

Specific function: Unknown

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786650, Length=565, Percent_Identity=49.5575221238938, Blast_Score=542, Evalue=1e-155,
Organism=Escherichia coli, GI1786256, Length=574, Percent_Identity=26.3066202090592, Blast_Score=189, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65359; Mature: 65359

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTHRLSQYQRLYQQLGGTPVAITVGELAAMFFCSERHARTLVQQLQDQGWLSWQSQPG
CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
RGKRAHLHCLKTPDELRAAHLQRLLKEGDHQGALEMAQLDPQHLQELLSPHLGGQWQAGS
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCC
PTLRIPYYRTLESLDPLTLTGRAEQHLVATLHAGLTRFNTGNSEPQSDLAHHWQISHDGL
CEEECCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEECCCCC
RWQFFLRSQLRWHNGEPLTGQQLLQTLEKLQHHPRSQPSLANVAAISLPHALCLQFDLQC
EEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHEECCCC
PDYWLAHRLAELPCLLTHPEASGMGAGPFKLTLNQPHLVRLEQHPFYHLQHPFLESIEYW
CHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCHHCCHHHHCCHHE
ITPELNTGEAYTSCQHPVRITLGQQEEIALARPVQRSMSLGWCYLAVNLKHGVLSEAQGK
ECCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
KLLMLIQQSGLLANLPVPNSVITPSSEMLPGWAIPQHQAAEDIALPAKLTLLYRPPVELE
EEEEEEECCCCEEECCCCCCCCCCCHHCCCCCCCCCHHCHHHHCCCCEEEEEECCCCCHH
TVTVALQQLLAQHGCELELRYYAGKRWQSAEQIEQADLLLADNLIGESPEATLESWLRQD
HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TLWRGILPDARWQHQQQTLQQIQQLPAQQTRYQQLKDYYQQLMAAAIITPLFHYQYQISA
HHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
PPRIHGVTLTAHGWFDFCQAWLPPPVENTTPPSTD
CCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLTHRLSQYQRLYQQLGGTPVAITVGELAAMFFCSERHARTLVQQLQDQGWLSWQSQPG
CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
RGKRAHLHCLKTPDELRAAHLQRLLKEGDHQGALEMAQLDPQHLQELLSPHLGGQWQAGS
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCC
PTLRIPYYRTLESLDPLTLTGRAEQHLVATLHAGLTRFNTGNSEPQSDLAHHWQISHDGL
CEEECCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEECCCCC
RWQFFLRSQLRWHNGEPLTGQQLLQTLEKLQHHPRSQPSLANVAAISLPHALCLQFDLQC
EEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHEECCCC
PDYWLAHRLAELPCLLTHPEASGMGAGPFKLTLNQPHLVRLEQHPFYHLQHPFLESIEYW
CHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCHHCCHHHHCCHHE
ITPELNTGEAYTSCQHPVRITLGQQEEIALARPVQRSMSLGWCYLAVNLKHGVLSEAQGK
ECCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
KLLMLIQQSGLLANLPVPNSVITPSSEMLPGWAIPQHQAAEDIALPAKLTLLYRPPVELE
EEEEEEECCCCEEECCCCCCCCCCCHHCCCCCCCCCHHCHHHHCCCCEEEEEECCCCCHH
TVTVALQQLLAQHGCELELRYYAGKRWQSAEQIEQADLLLADNLIGESPEATLESWLRQD
HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TLWRGILPDARWQHQQQTLQQIQQLPAQQTRYQQLKDYYQQLMAAAIITPLFHYQYQISA
HHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
PPRIHGVTLTAHGWFDFCQAWLPPPVENTTPPSTD
CCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]