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The map label for this gene is ybaV [H]

Identifier: 157369343

GI number: 157369343

Start: 1211877

End: 1212266

Strand: Direct

Name: ybaV [H]

Synonym: Spro_1100

Alternate gene names: 157369343

Gene position: 1211877-1212266 (Clockwise)

Preceding gene: 157369342

Following gene: 157369344

Centisome position: 22.24

GC content: 54.62

Gene sequence:

>390_bases
ATGCAACCTACAGTAATAAAAGCGGTAAATGAGAGTGGTTTTAACTTCAAAGCCTTGCTGACCGTAGCACTGCTCTGCCT
GACCGGGCCATCTTTGGCCGCGGAAGAAAAAGCGCTTACCGGGCAACCGGTGCTATCCGTAACGGCGGCTAATGCCGGGC
AGGGTGCAGAGGCCGTGGCGGCTGCCAATGATGAAGCATCGGTCAGTATCAATCAGGCCGATGCCGAACAGCTGGCCAGC
ATACTCAAGGGAGTTGGATTGAAAAAAGCAGAGAGCATTGTGCGCTACCGCGAGCAGAATGGCCCCTTTACGCAGATTGA
GCAGCTTCAGGAAGTACCGGGCATTGGGCCTGCACTGTTTGAAAGGAATCGCGCGCGGCTCAAAATGTGA

Upstream 100 bases:

>100_bases
GCCGCTTTCGCGGCCTTTTCCATATCTGAAATCCGCCAATTGCTGAAGTTTCTTCGCTGCGGCAAGGTGAGCTTGCTGTT
ACACACAAGGAGGATACAGC

Downstream 100 bases:

>100_bases
TTTCGATCACGGCTGCGTGGCAAAGTGATAATGCAGCCCTTTTTCCTCTGCTACATTTTACAGGTCTTACCAGTTTGGCA
CCTTGACCAAATGGGTGAAG

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MQPTVIKAVNESGFNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANAGQGAEAVAAANDEASVSINQADAEQLAS
ILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLKM

Sequences:

>Translated_129_residues
MQPTVIKAVNESGFNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANAGQGAEAVAAANDEASVSINQADAEQLAS
ILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLKM
>Mature_129_residues
MQPTVIKAVNESGFNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANAGQGAEAVAAANDEASVSINQADAEQLAS
ILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLKM

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=121, Percent_Identity=46.2809917355372, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13533; Mature: 13533

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTVIKAVNESGFNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANAGQGAEAVA
CCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCCCHHE
AANDEASVSINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALF
ECCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHH
ERNRARLKM
HCCHHHCCC
>Mature Secondary Structure
MQPTVIKAVNESGFNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANAGQGAEAVA
CCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCCCHHE
AANDEASVSINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALF
ECCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHH
ERNRARLKM
HCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]