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The map label for this gene is xseB

Identifier: 157369323

GI number: 157369323

Start: 1188557

End: 1188820

Strand: Reverse

Name: xseB

Synonym: Spro_1080

Alternate gene names: 157369323

Gene position: 1188820-1188557 (Counterclockwise)

Preceding gene: 157369325

Following gene: 157369322

Centisome position: 21.82

GC content: 54.92

Gene sequence:

>264_bases
ATGCCAAAAAAACCTGCACAATCAGACAGTACAGAGCAAAGCGTCAGCTTTGAAAGCTCCCTTAGCGAGTTGGAAAGCAT
CGTCACGCGTCTGGAATCGGGTGAGTTACCGCTGGAAGACGCGCTCAATGAGTTCGAACGCGGCGTACAGTTGGCACGCC
AGGGCCAGCAGAAACTGCAGCAGGCGGAGCAACGCGTACAAATTTTGCTTAACGACAGCGCCGATGATGCGGCGCTGACG
CCTTTCACACCGGATGCCGAGTAA

Upstream 100 bases:

>100_bases
CGGTGCACAAAACCACACTTGTGCGCCATGATTTGCCAATCAAGACCCGCTAAGATAGGCTCTGGCGCCACTGTTCACAT
GATGATGTAAAAAGAAAATT

Downstream 100 bases:

>100_bases
TCACCATGTCCGAGACTGTCCAACAGACCGCCTTTTCTGACCAGTTGCAGGCTTTACGCCAGCGGGCCGACCGCACGCTG
CTTAATTTTATCGCGCCACT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MPKKPAQSDSTEQSVSFESSLSELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALT
PFTPDAE

Sequences:

>Translated_87_residues
MPKKPAQSDSTEQSVSFESSLSELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALT
PFTPDAE
>Mature_86_residues
PKKPAQSDSTEQSVSFESSLSELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALTP
FTPDAE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=87, Percent_Identity=74.7126436781609, Blast_Score=119, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_SERP5 (A8GAP4)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001477312.1
- ProteinModelPortal:   A8GAP4
- SMR:   A8GAP4
- STRING:   A8GAP4
- GeneID:   5606830
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1080
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   APLNDYK
- ProtClustDB:   PRK00977
- BioCyc:   SPRO399741:SPRO_1080-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9589; Mature: 9457

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKPAQSDSTEQSVSFESSLSELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QAEQRVQILLNDSADDAALTPFTPDAE
HHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKKPAQSDSTEQSVSFESSLSELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QAEQRVQILLNDSADDAALTPFTPDAE
HHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA