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The map label for this gene is yeaM [H]

Identifier: 157368841

GI number: 157368841

Start: 660603

End: 661457

Strand: Reverse

Name: yeaM [H]

Synonym: Spro_0596

Alternate gene names: 157368841

Gene position: 661457-660603 (Counterclockwise)

Preceding gene: 157368850

Following gene: 157368834

Centisome position: 12.14

GC content: 59.18

Gene sequence:

>855_bases
ATGTTTTTCAATTACGCCAAACTGAGAATTATTCTCATGACCTTTATCACCGAGCCGCGTTTCGATATCGATCAGGTACC
GCGCGCCATTTTTGCCGTGCAGGGCTCCACCATTGATAAAGATTGGGAGATCACCCATCACCGGCACCGCAAAGCACAGC
TGATTTATACGGTGCGCGGCATGATCCGTTGCGAGGTGGAAAACGGTCTGTGGCTGGTGCCGCCACAGTGTGCGTTATGG
ATGCCCAGCAATGTGCTGCATAACGCCCAGGGGGCCAGTGCCAGCGAGTGCTACTGCCTGTTTGTCGATCAGGATGCTAT
CGCCGGGTTGCCGACCCACTGCTGTACGCTGGCGGTGTCCCCGCTGCTGCGTGAACTGCTGTTCCAGGCCAGCGCTTTCG
AACAGCTGTACGACCAACAAGGCCCGGAAGGACGATTGGCCGGCGTATTGTTGGATCAGTTGGTCAAGGCGCCGGTTGAG
AATCTGCACCTGCCGGTCTCCAATGACGCGCGCATTCGCCAGTTAACAGAGCGGCTGCTGGCCAACCCGGCGGACAAGGC
GACACTTGGCCAATGGGCGCAGCGTATCGGCATGAGCGAACGCTCGCTCAACCGCACTCTGCAACAACAAATGGGCATGA
GCTTTGGCCACTGGCGGCGACAATTGCACGTGGTGCTGGCGCTGCAACGGCTGACCCAGGGTGACAGCGTGCAACGGGTG
GCGCTGGATCTGGGCTACGAAAGCGCCAGCGGTTTTGTCACCATGTTCAGAAAAGCGGTGGGTAAACCGCCGGCGCGCTA
TCTGGCAGAGAAAAACGCGGCGGACCGGGCGCAAGGGGCCGGGATCGTCATGTAG

Upstream 100 bases:

>100_bases
TGTTGTTGATACATAGCGCCACCTTATCTCCTGAGAGTGCCAAAACCAGCGCTCACTGTATCGGTCGCGGTGCTAGACCA
CATTGCACAATCAGGACATA

Downstream 100 bases:

>100_bases
TACCGAAACCGGCCACAAAGTTACTGCGCCAACCAGCCGCCATCCATATTCCAGGCGGCACCGCGCACCTGCACTGCGGC
GTCGCTGCACAGAAACAGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MFFNYAKLRIILMTFITEPRFDIDQVPRAIFAVQGSTIDKDWEITHHRHRKAQLIYTVRGMIRCEVENGLWLVPPQCALW
MPSNVLHNAQGASASECYCLFVDQDAIAGLPTHCCTLAVSPLLRELLFQASAFEQLYDQQGPEGRLAGVLLDQLVKAPVE
NLHLPVSNDARIRQLTERLLANPADKATLGQWAQRIGMSERSLNRTLQQQMGMSFGHWRRQLHVVLALQRLTQGDSVQRV
ALDLGYESASGFVTMFRKAVGKPPARYLAEKNAADRAQGAGIVM

Sequences:

>Translated_284_residues
MFFNYAKLRIILMTFITEPRFDIDQVPRAIFAVQGSTIDKDWEITHHRHRKAQLIYTVRGMIRCEVENGLWLVPPQCALW
MPSNVLHNAQGASASECYCLFVDQDAIAGLPTHCCTLAVSPLLRELLFQASAFEQLYDQQGPEGRLAGVLLDQLVKAPVE
NLHLPVSNDARIRQLTERLLANPADKATLGQWAQRIGMSERSLNRTLQQQMGMSFGHWRRQLHVVLALQRLTQGDSVQRV
ALDLGYESASGFVTMFRKAVGKPPARYLAEKNAADRAQGAGIVM
>Mature_284_residues
MFFNYAKLRIILMTFITEPRFDIDQVPRAIFAVQGSTIDKDWEITHHRHRKAQLIYTVRGMIRCEVENGLWLVPPQCALW
MPSNVLHNAQGASASECYCLFVDQDAIAGLPTHCCTLAVSPLLRELLFQASAFEQLYDQQGPEGRLAGVLLDQLVKAPVE
NLHLPVSNDARIRQLTERLLANPADKATLGQWAQRIGMSERSLNRTLQQQMGMSFGHWRRQLHVVLALQRLTQGDSVQRV
ALDLGYESASGFVTMFRKAVGKPPARYLAEKNAADRAQGAGIVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=44.8430493273543, Blast_Score=193, Evalue=1e-50,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31895; Mature: 31895

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFNYAKLRIILMTFITEPRFDIDQVPRAIFAVQGSTIDKDWEITHHRHRKAQLIYTVRG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECC
MIRCEVENGLWLVPPQCALWMPSNVLHNAQGASASECYCLFVDQDAIAGLPTHCCTLAVS
EEEEEECCCEEEECCCCCEECCHHHHHCCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHH
PLLRELLFQASAFEQLYDQQGPEGRLAGVLLDQLVKAPVENLHLPVSNDARIRQLTERLL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHH
ANPADKATLGQWAQRIGMSERSLNRTLQQQMGMSFGHWRRQLHVVLALQRLTQGDSVQRV
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ALDLGYESASGFVTMFRKAVGKPPARYLAEKNAADRAQGAGIVM
HHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure
MFFNYAKLRIILMTFITEPRFDIDQVPRAIFAVQGSTIDKDWEITHHRHRKAQLIYTVRG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECC
MIRCEVENGLWLVPPQCALWMPSNVLHNAQGASASECYCLFVDQDAIAGLPTHCCTLAVS
EEEEEECCCEEEECCCCCEECCHHHHHCCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHH
PLLRELLFQASAFEQLYDQQGPEGRLAGVLLDQLVKAPVENLHLPVSNDARIRQLTERLL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHH
ANPADKATLGQWAQRIGMSERSLNRTLQQQMGMSFGHWRRQLHVVLALQRLTQGDSVQRV
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ALDLGYESASGFVTMFRKAVGKPPARYLAEKNAADRAQGAGIVM
HHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]