Click here to switch to the map view.

The map label for this gene is yhbQ [C]

Identifier: 157368754

GI number: 157368754

Start: 560048

End: 560401

Strand: Reverse

Name: yhbQ [C]

Synonym: Spro_0507

Alternate gene names: 157368754

Gene position: 560401-560048 (Counterclockwise)

Preceding gene: 157368755

Following gene: 157368751

Centisome position: 10.28

GC content: 55.08

Gene sequence:

>354_bases
ATGCCATCATATTCCATCCCTGGCCACCAACGTTGCTGCTTATTCATGACGGAAATACTTCCAACCTGGCATCTCTACAT
GCTGCGCATGCCCAGCGGTATGCTGTATACCGGCATTACTACCGACGTAACGCGGCGGCTGGCGCAGCATCAGGCGGGCA
AAGGGGCCAAGGCGCTACGGGGTAAAGGCCAACTGGTGCTGGCGTTTCACTGTCAGGCGGGGGATCGCTCAAAAGCGCTG
AGACTGGAATATCGGGTCAAGCAACTGAGCAAAACGCAAAAAGAGAGGCTGGTGAGTCACCCGCCTCTTTCGTTGGATTA
TTTACTGCCGGACGTTGCGGTTAAAGCCGGTTAA

Upstream 100 bases:

>100_bases
ACGCTGTACGGTATGGTTTCACCGCGTTTCGAAATGGCGGGGAAAAAAGGCTAACGGTGATAAGCCATAGGCGGCCGGGG
ATGGGATTACGACGGGGAAC

Downstream 100 bases:

>100_bases
ACGGCTCGGAGTATTCCACCGCCCCGCCAACATCAACCAAGGCATCTTCCGCCAGTGGGTAAACCTGGAACGCGGCCTCG
GTGTCTGGCCAGCGGCACTG

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MPSYSIPGHQRCCLFMTEILPTWHLYMLRMPSGMLYTGITTDVTRRLAQHQAGKGAKALRGKGQLVLAFHCQAGDRSKAL
RLEYRVKQLSKTQKERLVSHPPLSLDYLLPDVAVKAG

Sequences:

>Translated_117_residues
MPSYSIPGHQRCCLFMTEILPTWHLYMLRMPSGMLYTGITTDVTRRLAQHQAGKGAKALRGKGQLVLAFHCQAGDRSKAL
RLEYRVKQLSKTQKERLVSHPPLSLDYLLPDVAVKAG
>Mature_116_residues
PSYSIPGHQRCCLFMTEILPTWHLYMLRMPSGMLYTGITTDVTRRLAQHQAGKGAKALRGKGQLVLAFHCQAGDRSKALR
LEYRVKQLSKTQKERLVSHPPLSLDYLLPDVAVKAG

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

Organism=Escherichia coli, GI1789545, Length=78, Percent_Identity=67.948717948718, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022992
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 13150; Mature: 13019

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSYSIPGHQRCCLFMTEILPTWHLYMLRMPSGMLYTGITTDVTRRLAQHQAGKGAKALR
CCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHC
GKGQLVLAFHCQAGDRSKALRLEYRVKQLSKTQKERLVSHPPLSLDYLLPDVAVKAG
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHCCCC
>Mature Secondary Structure 
PSYSIPGHQRCCLFMTEILPTWHLYMLRMPSGMLYTGITTDVTRRLAQHQAGKGAKALR
CCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHC
GKGQLVLAFHCQAGDRSKALRLEYRVKQLSKTQKERLVSHPPLSLDYLLPDVAVKAG
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA