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The map label for this gene is ubiD [H]

Identifier: 157368507

GI number: 157368507

Start: 286781

End: 288301

Strand: Direct

Name: ubiD [H]

Synonym: Spro_0258

Alternate gene names: 157368507

Gene position: 286781-288301 (Clockwise)

Preceding gene: 157368506

Following gene: 157368508

Centisome position: 5.26

GC content: 56.41

Gene sequence:

>1521_bases
ATGCCCTTCTCACTGGCCGTTATAATGATCAGCATGAAATACCGTGACTTACGCGATTTCCTCTCGTTGCTGGAAAAGAG
AGGGGAACTAAAACGCATCAGCCAGCCGATTGATCCCTATCTGGAAATGACAGAAATTGCCGATCGTACTTTACGTGCGG
GCGGCCCGGCGTTGCTGTTCGAAAACCCGAAAGGGTACGACATGCCGGTGCTGTGCAATCTGTTCGGTACTCCTGGTCGC
GTAGCGATGGGGATGGGCCAGGAAGACGTCAGCTCGTTGCGCGAGGTCGGCAAGTTGCTGGCGTTCCTTAAAGAGCCGGA
GCCGCCAAAGGGCTTTCGCGATCTGTTCGATAAACTGCCGAAGTTCAAGCAAGTGCTGAACATGCCGACCAAGGTGTTGG
GTTCAGCGCCTTGTCAGGAACAGGTATGGCAGGGGGATGACGTCGATCTCAGCCGTATCCCGGTGATGCACTGCTGGCCG
GAAGACGCCGCACCCTTGATCACCTGGGGCCTGACCGTGACCCGCGGGCCGCAAAAAGAGCGGCAGAACCTGGGTATTTA
TCGCCAACAGGTGCTGAGCAAGAATAAAGTCATCATGCGTTGGCTGTCGCACCGCGGCGGCGCGCTGGATTACCAGGAAT
GGTGCCAGGCGCATCCCGGTGAGCGTTTCCCGGTTGCGGTTGCGCTGGGCGCAGATCCCGCCACCATTCTCGGCGCGGTC
ACGCCAGTGCCGGATACCCTGTCTGAATATGCCTTTGCCGGGCTGCTGCGCGGCAACAAAACCGAAGTGGTCAAGTGTAT
CTCCTGCGATCTGGAAGTGCCCGCCAGCGCGGAAATCGTATTGGAAGGCTATATCGAGCCGGGTGAAATGGCGCCTGAAG
GCCCGTATGGCGATCACACCGGTTACTACAACGAAATTGACCACTTCCCGGTATTCACCATCACCCACATCACCCAGCGT
CGTGACGCCATTTATCACTCGACCTATACCGGCCGTCCGCCGGATGAGCCGGCGGTGTTGGGCGTGGCGCTCAATGAAGT
CTTCGTTCCTATCCTGCAAAAGCAGTTCCCGGAAATTGTCGATTTCTATCTGCCGCCTGAGGGTTGCTCATATCGCCTGG
CAGTGGTGACTATCAAGAAACAGTATGCCGGTCATGCCAAGCGCGTAATGATGGGGGTCTGGTCGTTCCTGCGTCAGTTT
ATGTACACCAAGTTTGTGATCGTCTGCGATGATGACGTCAACGCACGCGACTGGAATGATGTGATTTGGGCGATCACCAC
CCGAATGGATCCGGCAAGGGATACCGTTTTGGTGGAGAATACGCCGATCGATTATTTGGACTTCGCCTCACCGGTTTCCG
GTTTGGGATCGAAGATGGGGCTGGATGCCACCAATAAATGGCCGGGTGAAACCCAGCGCGAATGGGGCCGTCCGATTCAG
ATGGATGAAAAGGTGCGTGCGCGCGTCGATGAAATCTGGGATGAGCTCGCAATTTTCAGTGACAGAGAACCGACGCTTTA
G

Upstream 100 bases:

>100_bases
GCATTACGCCCGCTGGTGCCGTTCACGTGCCACTGAGTGCCGGTAAGGTCTTTACCGGTGTTTAACAAAAGTGCAGCAAC
AACCGTGAAGAGGGCTTATA

Downstream 100 bases:

>100_bases
CGCCAGGCTTTGTTCTCAGTTTTGCATTGATGACCCGACAGAGGGAACGCATGACAATATTGAGCTGTAAAGTGACCTCC
GTAGAGGCCATTACCGATAC

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MPFSLAVIMISMKYRDLRDFLSLLEKRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYDMPVLCNLFGTPGR
VAMGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLPKFKQVLNMPTKVLGSAPCQEQVWQGDDVDLSRIPVMHCWP
EDAAPLITWGLTVTRGPQKERQNLGIYRQQVLSKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVALGADPATILGAV
TPVPDTLSEYAFAGLLRGNKTEVVKCISCDLEVPASAEIVLEGYIEPGEMAPEGPYGDHTGYYNEIDHFPVFTITHITQR
RDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIQ
MDEKVRARVDEIWDELAIFSDREPTL

Sequences:

>Translated_506_residues
MPFSLAVIMISMKYRDLRDFLSLLEKRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYDMPVLCNLFGTPGR
VAMGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLPKFKQVLNMPTKVLGSAPCQEQVWQGDDVDLSRIPVMHCWP
EDAAPLITWGLTVTRGPQKERQNLGIYRQQVLSKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVALGADPATILGAV
TPVPDTLSEYAFAGLLRGNKTEVVKCISCDLEVPASAEIVLEGYIEPGEMAPEGPYGDHTGYYNEIDHFPVFTITHITQR
RDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIQ
MDEKVRARVDEIWDELAIFSDREPTL
>Mature_505_residues
PFSLAVIMISMKYRDLRDFLSLLEKRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYDMPVLCNLFGTPGRV
AMGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLPKFKQVLNMPTKVLGSAPCQEQVWQGDDVDLSRIPVMHCWPE
DAAPLITWGLTVTRGPQKERQNLGIYRQQVLSKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVALGADPATILGAVT
PVPDTLSEYAFAGLLRGNKTEVVKCISCDLEVPASAEIVLEGYIEPGEMAPEGPYGDHTGYYNEIDHFPVFTITHITQRR
DAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFM
YTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIQM
DEKVRARVDEIWDELAIFSDREPTL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=493, Percent_Identity=89.6551724137931, Blast_Score=926, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=25.8928571428571, Blast_Score=138, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 57085; Mature: 56954

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFSLAVIMISMKYRDLRDFLSLLEKRGELKRISQPIDPYLEMTEIADRTLRAGGPALLF
CCCEEEEEEEHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
ENPKGYDMPVLCNLFGTPGRVAMGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLP
ECCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KFKQVLNMPTKVLGSAPCQEQVWQGDDVDLSRIPVMHCWPEDAAPLITWGLTVTRGPQKE
HHHHHHCCCHHHHCCCCCHHHHCCCCCCCHHHCCEEEECCCCCCCEEEECEEECCCCHHH
RQNLGIYRQQVLSKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVALGADPATILGAV
HHHCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHCC
TPVPDTLSEYAFAGLLRGNKTEVVKCISCDLEVPASAEIVLEGYIEPGEMAPEGPYGDHT
CCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
GYYNEIDHFPVFTITHITQRRDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIV
CCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
DFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWND
HHCCCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC
VIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIQ
EEEEEEECCCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCC
MDEKVRARVDEIWDELAIFSDREPTL
CCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PFSLAVIMISMKYRDLRDFLSLLEKRGELKRISQPIDPYLEMTEIADRTLRAGGPALLF
CCEEEEEEEHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
ENPKGYDMPVLCNLFGTPGRVAMGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLP
ECCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KFKQVLNMPTKVLGSAPCQEQVWQGDDVDLSRIPVMHCWPEDAAPLITWGLTVTRGPQKE
HHHHHHCCCHHHHCCCCCHHHHCCCCCCCHHHCCEEEECCCCCCCEEEECEEECCCCHHH
RQNLGIYRQQVLSKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVALGADPATILGAV
HHHCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHCC
TPVPDTLSEYAFAGLLRGNKTEVVKCISCDLEVPASAEIVLEGYIEPGEMAPEGPYGDHT
CCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
GYYNEIDHFPVFTITHITQRRDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIV
CCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
DFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWND
HHCCCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC
VIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIQ
EEEEEEECCCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCC
MDEKVRARVDEIWDELAIFSDREPTL
CCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA