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The map label for this gene is yghS [H]

Identifier: 157162465

GI number: 157162465

Start: 3178074

End: 3178787

Strand: Reverse

Name: yghS [H]

Synonym: EcHS_A3165

Alternate gene names: 157162465

Gene position: 3178787-3178074 (Counterclockwise)

Preceding gene: 157162467

Following gene: 157162464

Centisome position: 68.46

GC content: 49.58

Gene sequence:

>714_bases
GTGAATCAACGTAATATGTCAATAATTAATTCCACGCCAGTGCATGTTATTGCCATTGTAGGATGTGATGGTTCAGGTAA
ATCGACCCTCACGGCAAGCCTGGTAAATGAACTGGCAGCAAGAATGCCAACAGAACACATTTATCTCGGGCAATCGTCCG
GGCGAATTGGCGAATGGATTTCACAGCTCCCTGTTATTGGCGCACCTTTTGGGCGTTATCTGCGAAGTAAAGCGGCACAT
GTGCACGAAAAGCCCTCAACACCGCCTGGCAATATTACTGCACTGGTTATCTATCTGCTTTCCTGCTGGCGGGCGTACAA
GTTTCGCAAAATGTTGTGTAAAAGCCAGCAAGGCTTTCTGCTCATCACCGACCGCTACCCGCAGGTTGAAGTGCCGGGGT
TTCGCTTTGATGGCCCGCAATTGGCAAAAACCACGGGCGGTAACGGTTGGATAAAAATGTTAAGGCAGCGCGAGTTGAAG
CTGTACCAATGGATGGCGTCTTATTTGCCCATATTGTTGATTCGTCTTGGCATTGATGAACAAACCGCGTTTGCGCGTAA
ACCTGACCACCAACTGGCAGCGTTACAGGAAAAAATCGCCGTTACGCCGCAATTGACATTCAATGGCGCAAAGATCCTTG
AACTGGATGGTCGGCAACCAGCCGATGAAATTCTGCAAGCGTCACTACGCGCAATTCACGCCGCGCTTTCCTGA

Upstream 100 bases:

>100_bases
AGGTCAATGTCACAATTAACCATTGTCACAATAAGGTTGAACGGATATTCTGAGCACGGACCACGTAATATTCAATACAT
TATTTACTGCCGGGTTTTTC

Downstream 100 bases:

>100_bases
TCACCAAAATGGATAGGGGATGATTTAACGAATGGATGCACTACAAACACAAACTGTTATTAGTACAACCGCGCCGCAGC
CCAACTACATTCCGGGGCTG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNQRNMSIINSTPVHVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAH
VHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELK
LYQWMASYLPILLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS

Sequences:

>Translated_237_residues
MNQRNMSIINSTPVHVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAH
VHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELK
LYQWMASYLPILLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS
>Mature_237_residues
MNQRNMSIINSTPVHVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAH
VHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELK
LYQWMASYLPILLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yghR and yghT [H]

Homologues:

Organism=Escherichia coli, GI1789358, Length=237, Percent_Identity=98.7341772151899, Blast_Score=486, Evalue=1e-139,
Organism=Escherichia coli, GI1789357, Length=240, Percent_Identity=42.5, Blast_Score=186, Evalue=9e-49,
Organism=Escherichia coli, GI1789359, Length=217, Percent_Identity=36.8663594470046, Blast_Score=161, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26333; Mature: 26333

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRNMSIINSTPVHVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWI
CCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
SQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFL
HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPILLIRLGIDE
EEECCCCCCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS
HHHHHCCCCHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQRNMSIINSTPVHVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWI
CCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
SQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFL
HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPILLIRLGIDE
EEECCCCCCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS
HHHHHCCCCHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]