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The map label for this gene is ynfD

Identifier: 157161045

GI number: 157161045

Start: 1679700

End: 1680005

Strand: Direct

Name: ynfD

Synonym: EcHS_A1659

Alternate gene names: 157161045

Gene position: 1679700-1680005 (Clockwise)

Preceding gene: 157161043

Following gene: 157161046

Centisome position: 36.17

GC content: 56.21

Gene sequence:

>306_bases
ATGAAACTCTCAACCTGCTGTGCCGCGCTTCTGCTCGCCCTCGCCTCACCCGCGGTACTCGCCGCGCCGGGATCCTGTGA
GCGCATACAGAGCGATATATCACAGCGCATTATCAATAATGGCGTACCCGAAAGCAGCTTCACGTTAAGTATTGTACCCA
ATGACCAGGTTGATCAGCCTGATTCCCAGGTCGTCGGCCATTGCGCTAATGATACGCATAAAATTCTCTATACCCGCACC
ACCAGCGGTAACGTCTCTGCTCCCGCGCAGTCTAGCCAGGATGGCGCGCCTGCCGAACCGCAGTAA

Upstream 100 bases:

>100_bases
ACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTAT
CTTCGCGTAAGGAGCTTATG

Downstream 100 bases:

>100_bases
CACATTATCGACTGAACGCCGGATATGACACATCCGGCGATTTGAACATACAACATAATCCCACCATATTACTCATACCC
TTCTATTGATGTGGATTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRT
TSGNVSAPAQSSQDGAPAEPQ

Sequences:

>Translated_101_residues
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRT
TSGNVSAPAQSSQDGAPAEPQ
>Mature_101_residues
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRT
TSGNVSAPAQSSQDGAPAEPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=101, Percent_Identity=100, Blast_Score=205, Evalue=5e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFD_ECOLI (P76172)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D64914
- RefSeq:   AP_002207.1
- RefSeq:   NP_416103.2
- ProteinModelPortal:   P76172
- DIP:   DIP-12764N
- STRING:   P76172
- EnsemblBacteria:   EBESCT00000000065
- EnsemblBacteria:   EBESCT00000016247
- GeneID:   946133
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5259
- KEGG:   eco:b1586
- EchoBASE:   EB3603
- EcoGene:   EG13842
- eggNOG:   NOG43710
- GeneTree:   EBGT00050000011427
- HOGENOM:   HBG636732
- OMA:   DAQVVGH
- ProtClustDB:   CLSK880138
- BioCyc:   EcoCyc:G6844-MONOMER
- Genevestigator:   P76172
- InterPro:   IPR010595
- ProDom:   PD336997

Pfam domain/function: PF06649 DUF1161

EC number: NA

Molecular weight: Translated: 10477; Mature: 10477

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQP
CCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
DSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQP
CCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
DSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784