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The map label for this gene is yddM

Identifier: 157160953

GI number: 157160953

Start: 1569210

End: 1569494

Strand: Reverse

Name: yddM

Synonym: EcHS_A1562

Alternate gene names: 157160953

Gene position: 1569494-1569210 (Counterclockwise)

Preceding gene: 157160954

Following gene: 157160948

Centisome position: 33.8

GC content: 51.23

Gene sequence:

>285_bases
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTTAATGTCAGCCTGCGCGAGTT
TGCCAGAGCAATGGAAATTGCTCCCTCAACGGCAAGCCGATTGCTGACAGGAAAAGCAGCTTTGACGCCAGAAATGGCAA
TTAAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCAGAA
AAAACGGTGGATGTGTCGCGATTACGCCGTCTGGTTACGCAATAA

Upstream 100 bases:

>100_bases
CTCTCCAACATGAAATGGCTAAATGGATTATTGTTGCGTAGGAAGGAACAATAATGATAGTGTTCCCAGTGAAGGAACGC
TACTGAGAGTAAAGACACTA

Downstream 100 bases:

>100_bases
AAAAATGGCAGTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTA
CACGTTCACTGCAATCTATT

Product: addiction module antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE
KTVDVSRLRRLVTQ

Sequences:

>Translated_94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE
KTVDVSRLRRLVTQ
>Mature_94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE
KTVDVSRLRRLVTQ

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI145693133, Length=94, Percent_Identity=100, Blast_Score=189, Evalue=2e-50,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YDDM_ECOL6 (P67700)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753806.1
- ProteinModelPortal:   P67700
- SMR:   P67700
- PRIDE:   P67700
- EnsemblBacteria:   EBESCT00000040965
- GeneID:   1035813
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1909
- GeneTree:   EBGT00050000011399
- HOGENOM:   HBG665723
- OMA:   PHPGEFI
- ProtClustDB:   CLSK880046
- GO:   GO:0006350
- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530
- TIGRFAMs:   TIGR02607

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 10401; Mature: 10401

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHEEEEEEE
GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHEEEEEEE
GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157