Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 157160912

GI number: 157160912

Start: 1527169

End: 1529172

Strand: Direct

Name: ydcP [H]

Synonym: EcHS_A1519

Alternate gene names: 157160912

Gene position: 1527169-1529172 (Clockwise)

Preceding gene: 157160911

Following gene: 157160915

Centisome position: 32.89

GC content: 50.75

Gene sequence:

>2004_bases
GTGGCTAAAATAGCCGCCATTTTTCAGCTACTGGATAAGAATGTGACCGTATCTTCTCATCGACTTGAACTGTTAAGCCC
GGCACGCGATGCCGCCATTGCCCGCGAAGCTATTTTGCACGGTGCCGATGCTGTTTATATCGGCGGCCCTGGTTTTGGTG
CCCGTCATAATGCCAGTAATAGCTTGAAAGATATTGCCGAGCTGGTGCCGTTTGCCCATCGTTATGGTGCAAAAATTTTC
GTCACGCTTAACACCATTTTGCATGATGATGAGCTGGAACCCGCGCAACGGCTGATTACTGACCTCTACCAGACCGGTGT
CGATGCGCTGATTGTTCAGGATATGGGGATTCTGGAACTTGATATTCCGCCGATTGAACTGCACGCCAGTACGCAGTGCG
ACATTCGTACAGTTGAAAAAGCGAAGTTCCTCTCTGATGTTGGCTTCACGCAGATTGTGCTGGCGCGAGAGCTGAATCTT
GATCAGATCCGCGCGATTCACCAGGCTACGGACGCGACCATTGAATTCTTTATTCATGGGGCACTGTGCGTGGCCTATTC
GGGTCAGTGCTACATTTCTCATGCGCAAACAGGGCGTAGCGCCAACCGTGGCGATTGCTCGCAGGCGTGCCGTTTGCCAT
ACACATTGAAAGACGATCAGGGGCGGGTGGTTTCCTATGAAAAACATCTGCTGTCGATGAAAGATAACGATCAGACTGCC
AACCTCGGCGCGCTGATTGATGCTGGTGTACGCTCCTTCAAGATTGAAGGGCGTTACAAAGATATGAGCTACGTGAAGAA
TATCACCGCCCATTATCGCCAGATGCTTGATGCCATTATTGAAGAACGTGGCGATCTGGCGCGCGCTTCATCAGGTCGTA
CTGAACATTTCTTTGTTCCATCGACGGAAAAGACTTTCCACCGTGGTAGCACAGATTATTTTGTGAATGCCCGTAAAGGC
GATATTGGCGCGTTCGATTCGCCGAAATTTATCGGCCTGCCGGTAGGCGAAGTATTGAAAGTGGCGAAAGATCATCTCGA
TGTTGCCGTTACCGAGCCACTGGCAAATGGCGATGGCCTGAACGTGTTGATTAAACGTGAAGTCGTCGGTTTTCGTGCCA
ATACGGTCGAGAAAACCGGAGAAAATCAGTACCGCGTCTGGCCCAATGAAATGCCAGCAGATTTGCACAAAATTCGTCCA
CATCACCCACTAAACCGTAATCTTGATCATAACTGGCAGCAGGCACTGACAAAAACCTCCAGCGAACGTCGGGTGGCGGT
AGACATTGAACTGGGCGGCTGGCAGGAACAACTGATTCTGACCCTCACCAGTGAAGAGGGTGTCAGCATCACGCATACGC
TGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAA
ACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG
CCGTGAAGCTGCTGACATGCTGGATGCTGCGCGTCTTGCCAGTTACCAGCGCGGCAGCCGTAAACCGGTTGCTGATCCTG
CGCCGGTTTATCCGCAAACGCATCTGAGTTTCCTCGCGAACGTATACAACCAGAAAGCGCGTGAATTTTATCATCGCTAT
GGTGTGCAGCTGATTGACGCGGCGTATGAAGCACATGAAGAGAAGGGCGAAGTCCCGGTGATGATCACCAAGCATTGTCT
GCGCTTTGCCTTTAATCTGTGCCCGAAACAGGCGAAAGGCAATATCAAAAGCTGGAAGGCGACGCCAATGCAACTGGTTA
ACGGCGATGAAGTATTAACGCTAAAGTTTGATTGCCGCCCATGCGAGATGCACGTCATTGGCAAAATCAAAAATCACATA
CTGAAAATGCCGTTACCGGGAAGCGTAGTGGCATCCGTAAGTCCGGATGAGCTGCTGAAAACATTGCCTAAGCGAAAAGG
GTAA

Upstream 100 bases:

>100_bases
GCATATCTATCGTAATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTACCCGCGCAGTTAAGCGGGAAAAC
TATTTCGCAACGTCGCGCTT

Downstream 100 bases:

>100_bases
AACGCCAGTTTTCTGGTTACTCACAACTCATTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTCACGCCGCATCCGG
CAACAAATGACTCAACGTTG

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 666

Protein sequence:

>667_residues
MAKIAAIFQLLDKNVTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIF
VTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNL
DQIRAIHQATDATIEFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTA
NLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKG
DIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRP
HHPLNRNLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQ
TLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRY
GVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHI
LKMPLPGSVVASVSPDELLKTLPKRKG

Sequences:

>Translated_667_residues
MAKIAAIFQLLDKNVTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIF
VTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNL
DQIRAIHQATDATIEFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTA
NLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKG
DIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRP
HHPLNRNLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQ
TLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRY
GVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHI
LKMPLPGSVVASVSPDELLKTLPKRKG
>Mature_666_residues
AKIAAIFQLLDKNVTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFV
TLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLD
QIRAIHQATDATIEFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTAN
LGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGD
IGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPH
HPLNRNLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQT
LYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYG
VQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHIL
KMPLPGSVVASVSPDELLKTLPKRKG

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=653, Percent_Identity=99.6937212863706, Blast_Score=1359, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=441, Percent_Identity=29.0249433106576, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=32.7645051194539, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 74243; Mature: 74111

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIAAIFQLLDKNVTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASN
CHHHHHHHHHHHCCCEECHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCH
SLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILEL
HHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEE
DIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHG
CCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHH
ALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTA
EEEEEECCCEEEEECCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCC
NLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVP
CHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECC
STEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGL
CCHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCEEEECCCCCCCCC
NVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTS
EEEEEEEECCCCCCCHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCC
SERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQ
CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
TLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQT
HHEEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
HLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCC
NIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLK
CCCCCCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHH
TLPKRKG
HCCCCCC
>Mature Secondary Structure 
AKIAAIFQLLDKNVTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASN
HHHHHHHHHHHCCCEECHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCH
SLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILEL
HHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEE
DIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHG
CCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHH
ALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTA
EEEEEECCCEEEEECCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCC
NLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVP
CHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECC
STEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDVAVTEPLANGDGL
CCHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCEEEECCCCCCCCC
NVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTS
EEEEEEEECCCCCCCHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCC
SERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQ
CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
TLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQT
HHEEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
HLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCC
NIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLK
CCCCCCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHH
TLPKRKG
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]