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The map label for this gene is ydcN

Identifier: 157160911

GI number: 157160911

Start: 1526602

End: 1527138

Strand: Direct

Name: ydcN

Synonym: EcHS_A1517

Alternate gene names: 157160911

Gene position: 1526602-1527138 (Clockwise)

Preceding gene: 157160909

Following gene: 157160912

Centisome position: 32.88

GC content: 49.35

Gene sequence:

>537_bases
ATGGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACTGGC
AGAAGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGA
AAATTGCCACCGGGTTGAACGTACCATTTTCAACATTTATTTCTCCGCCGCAGTCCGCTACGCCTTCAGTTTATGATCCA
CAACAGCAGGCGATGGTGATCACTTCGCTGTTTCCTTATGATCCACAACTCTGCTTTGAACACTTCTCGATTCAGATGGC
ATCTGGTGCAATAAGCGAATCGACGCCCCATGAGAAGGGGGTAATCGAACATGTCGTCGTCATTGATGGACAACTTGATC
TGTGCGTTGATGGGGAATGGCAGACCCTTAATTGTGGGGAAGGCGTTCGATTTGCTGCAGACGTCACGCATATCTATCGT
AATGGTGGGGAGCAAACCGTACATTTTCATTCCCTCATCCATTACCCGCGCAGTTAA

Upstream 100 bases:

>100_bases
CAGACGCATAGTCACCTCGTGCGTTATAGCGTACAGGCACCGTAGCATTTGTCCGTTATAACGCACAAGTGATAAACTTC
CGTTTTGCCGGAGGAGTCGC

Downstream 100 bases:

>100_bases
GCGGGAAAACTATTTCGCAACGTCGCGCTTGTGGCTAAAATAGCCGCCATTTTTCAGCTACTGGATAAGAATGTGACCGT
ATCTTCTCATCGACTTGAAC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS

Sequences:

>Translated_178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS
>Mature_178_residues
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDP
QQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
NGGEQTVHFHSLIHYPRS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=100, Blast_Score=372, Evalue=1e-105,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YDCN_ECOLI (P77626)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E64895
- RefSeq:   AP_002057.1
- RefSeq:   NP_415951.1
- ProteinModelPortal:   P77626
- SMR:   P77626
- DIP:   DIP-11649N
- STRING:   P77626
- EnsemblBacteria:   EBESCT00000000704
- EnsemblBacteria:   EBESCT00000017510
- GeneID:   946000
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1430
- KEGG:   eco:b1434
- EchoBASE:   EB3520
- EcoGene:   EG13757
- eggNOG:   COG1396
- GeneTree:   EBGT00050000009966
- HOGENOM:   HBG700107
- OMA:   YLATTLK
- ProtClustDB:   CLSK880072
- BioCyc:   EcoCyc:G6745-MONOMER
- Genevestigator:   P77626
- GO:   GO:0006350
- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710
- Gene3D:   G3DSA:2.60.120.10
- SMART:   SM00530

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3; SSF47413 Lambda_like_DNA; SSF51182 RmlC_like_cupin

EC number: NA

Molecular weight: Translated: 19732; Mature: 19732

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
CCHHHHCCCCCCCCCCCCCCHHHHEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
CEEEEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHCCCCC
>Mature Secondary Structure
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
CCHHHHCCCCCCCCCCCCCCHHHHEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
CEEEEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503