Click here to switch to the map view.

The map label for this gene is cspE [H]

Identifier: 157160119

GI number: 157160119

Start: 693373

End: 693582

Strand: Direct

Name: cspE [H]

Synonym: EcHS_A0675

Alternate gene names: 157160119

Gene position: 693373-693582 (Clockwise)

Preceding gene: 157160118

Following gene: 157160121

Centisome position: 14.93

GC content: 43.81

Gene sequence:

>210_bases
ATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAA
AGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAA
TCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAA

Upstream 100 bases:

>100_bases
TCACTTTTTAGTAAAGTTGCACTGGACAAAGCGTACCACAATTGGTGTACTGGTAACCGACACAGCATTTGTGTCTATTT
TTCATGTAAAGGTAATTTTG

Downstream 100 bases:

>100_bases
GATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACA
GCCAGAAAGCCAGTGCTGTC

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL

Sequences:

>Translated_69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
>Mature_68_residues
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=44.2857142857143, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI34098946, Length=70, Percent_Identity=44.2857142857143, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=100, Blast_Score=140, Evalue=2e-35,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=82.6086956521739, Blast_Score=118, Evalue=9e-29,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=72.0588235294118, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=70.1492537313433, Blast_Score=102, Evalue=7e-24,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=67.6470588235294, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=69.6969696969697, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI2367112, Length=64, Percent_Identity=50, Blast_Score=62, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7464; Mature: 7332

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG
CCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCC
PSAANVIAL
CCCEEEEEC
>Mature Secondary Structure 
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG
CCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCC
PSAANVIAL
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]