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The map label for this gene is ybdF

Identifier: 157160071

GI number: 157160071

Start: 641599

End: 641967

Strand: Reverse

Name: ybdF

Synonym: EcHS_A0626

Alternate gene names: 157160071

Gene position: 641967-641599 (Counterclockwise)

Preceding gene: 157160072

Following gene: 157160070

Centisome position: 13.82

GC content: 47.7

Gene sequence:

>369_bases
ATGGATAAGCAATCACTGCACGAAACGGCGAAACGCCTGGCCCTTGAGTTACCCTTTGTCGAGCTTTGCTGGCCTTTTGG
CCCGGAGTTCGATGTTTTTAAAATTGGCGGCAAGATTTTTATGCTGTCGTCGGAGCTACGCGGCGTCCCCTTTATCAATC
TGAAGTCCGATCCACAAAAATCCCTGTTAAATCAGCAAATATACCCAAGCATTAAGCCAGGGTATCACATGAATAAAAAG
CACTGGATTTCGGTGTATCCCGGCGAGGAAATCTCCGAAGCGTTACTTCGCGATCTGATCAACGATTCGTGGAATCTGGT
GGTTGATGGTCTGGCTAAACGCGATCAAAAAAGAGTGCGTCCAGGCTAA

Upstream 100 bases:

>100_bases
TTTATCTGGCGACGCTGGTTCTCGCTGGCGGATTAAACGTCGATTATCGCCGTACTTCGCGGCATACTTTGCTTATTCTC
CTTCGCCTAAAGGAACGTTT

Downstream 100 bases:

>100_bases
AGCGGAAATCTATAGCGCATTTTTCTCGCTTACCATTTCTCGTTGAACCTTGTAATCTGCTGGCACGCAAAATTACTTTC
ACATGGAGTCTTTATGGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG

Sequences:

>Translated_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
>Mature_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=122, Percent_Identity=100, Blast_Score=252, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBDF_ECO57 (P0AAT3)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A90706
- PIR:   D85556
- RefSeq:   NP_286304.1
- RefSeq:   NP_308644.1
- ProteinModelPortal:   P0AAT3
- SMR:   P0AAT3
- EnsemblBacteria:   EBESCT00000026123
- EnsemblBacteria:   EBESCT00000055809
- GeneID:   916976
- GeneID:   957578
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0718
- KEGG:   ecs:ECs0617
- GeneTree:   EBGT00050000010833
- HOGENOM:   HBG662341
- OMA:   KKHWITV
- ProtClustDB:   PRK10250
- BioCyc:   ECOL83334:ECS0617-MONOMER
- InterPro:   IPR007351

Pfam domain/function: PF04237 DUF419

EC number: NA

Molecular weight: Translated: 14050; Mature: 14050

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCC
PG
CC
>Mature Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796