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The map label for this gene is araH [H]

Identifier: 157156388

GI number: 157156388

Start: 2109375

End: 2110361

Strand: Reverse

Name: araH [H]

Synonym: EcE24377A_2130

Alternate gene names: 157156388

Gene position: 2110361-2109375 (Counterclockwise)

Preceding gene: 157156751

Following gene: 157158032

Centisome position: 42.38

GC content: 50.66

Gene sequence:

>987_bases
ATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCAT
GCTGGTGGTGTTTGCGGTGCTCTTTATCGCCTGTGCCATTTTTGTCCCAAATTTTGCCACCTTCATTAATATGAAAGGGT
TGGGCCTGGCAATTTCCATGTCGGGGATGGTGGCGTGTGGCATGTTGTTCTGCCTTGCTTCCGGTGACTTTGACCTTTCT
GTCGCCTCCGTAATTGCCTGTGCGGGTGTCACCACGGCGGTGGTTATCAACCTGACTGAAAGCCTGTGGATTGGCGTGGC
AGCGGGGTTGCTGCTTGGCATTCTCTGTGGCCTGGTCAATGGCTTTGTTATCGCCAAACTGAAAATAAATGCTCTGATCA
CAACACTGGCAACGATGCAGATTGTTCGAGGTCTGGCGTACATCATTTCAGACGGTAAAGCGGTCGGTATCGAAGATGAA
AGCTTCTTTGCCCTTGGTTACGCTAACTGGTTCGGTCTGCCTGCGCCAATCTGGCTCACCGTCGCGTGTCTGATTATCTT
TGGTTTGTTGCTGAATAAAACCACCTTTGGTCGTAACACCCTGGCGATTGGCGGGAACGAAGAGGCTGCGCGTCTGGCGG
GTGTACCGGTTGTTCGCACCAAAATTATTATCTTTGTTCTCTCTGGCCTGGTATCTGCGATAGCCGGAATTATTCTGGCT
TCACGTATGACTAGTGGGCAGCCAATGACGTCGATTGGTTATGAGCTTATTGTTATCTCCGCCTGCGTTTTAGGTGGCGT
TTCTCTGAAAGGTGGCATCGGAAAAATCTCATATGTGGTGGCGGGTATCTTAATTTTAGGCACCGTGGAAAACGCCATGA
ACCTGCTTAATATTTCTCCTTTCGCGCAGTACGTGGTTCGCGGCTTAATCCTGCTGGCAGCGGTGATCTTCGACCGTTAC
AAGCAAAAAGCGAAACGCACTGTCTGA

Upstream 100 bases:

>100_bases
TCGCCGGTGAATTGTTACACGAGCAGGCAGATGAGCGTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCAGTT
GCCTGAGTAAGGAGAGAATG

Downstream 100 bases:

>100_bases
TGCTTTTTTCCACAACAATTTAACGTTTTTTCCCACCACAGCCAGCCGCCACAACGGTTGGCTGTTCTTCATTGCAAATG
GCGACCCCCGTCACACTGTC

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLS
VASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA
SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRY
KQKAKRTV

Sequences:

>Translated_328_residues
MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLS
VASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA
SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRY
KQKAKRTV
>Mature_327_residues
SSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSV
ASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDES
FFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILAS
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYK
QKAKRTV

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=99.6951219512195, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=35.8064516129032, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=30.188679245283, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=31.8327974276527, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=46.2121212121212, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082395, Length=272, Percent_Identity=31.9852941176471, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=35.15625, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=38.4297520661157, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788471, Length=321, Percent_Identity=30.8411214953271, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787794, Length=274, Percent_Identity=28.8321167883212, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34225; Mature: 34094

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEH
SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLT
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEHHHCCCCHHHHHH
VACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA
HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISP
HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
FAQYVVRGLILLAAVIFDRYKQKAKRTV
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEH
SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLT
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEHHHCCCCHHHHHH
VACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA
HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISP
HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
FAQYVVRGLILLAAVIFDRYKQKAKRTV
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]