Click here to switch to the map view.

The map label for this gene is tfaD [H]

Identifier: 157155074

GI number: 157155074

Start: 2193020

End: 2194984

Strand: Reverse

Name: tfaD [H]

Synonym: EcE24377A_2230

Alternate gene names: 157155074

Gene position: 2194984-2193020 (Counterclockwise)

Preceding gene: 157157783

Following gene: 157157074

Centisome position: 44.08

GC content: 53.33

Gene sequence:

>1965_bases
ATGAACTGGCAGACATACGAGTCGACTTCAGCGATTACGATGTCAGCGATATCGAACGCGATCTCGACAGGGTTGAATCC
CTTGCGCGTGACGATACCGATGACGGGGGTTGAGTGGGCTGATAAATATTTTTATCTCCCTGAGGGCTCCAGCCACATCG
CTGGCCACTGGACGACTCAGCCGGTCCAGGTAGTGATGCTCAATATGATGACTAACGACGCGATAAAAATCGTGTCTGTT
CGCAAATCAGCTCGTCTCGGTTATACAAAAATACTCGTCGCGGCGCTGCTCTATTTCGCTGAGCACAAAAAACGTAGTGC
CGTGGTCTATCAGCCTATCGATGACGAATCGGATGGATTTGTTGCCGACGAGGTTGACCCCGCTATCGCCGAAATGCCGG
TGATTCAGAAAATTTTCCCCGACTGGGATAAAAGCAACGAGCGTAACAATCTCCAGCGTAAAGAAATGAGCGGCGCGATT
ATTGATTTTCGCGGCGCGAGTGCACCAGGAAATTTCCGGCGACTAACGAAACAGGTTGTCGAGGGTGACGAAGTTGACGG
CTGGCCGCTGGAAGTTGCCAAAAAAGGCAAAGGCGAGGGCTCGCCCATCGAACTGGCGCTCGTTCGAATTAAAGGGGCAG
CGTACCCGAAGGCGATTTTCGGCTCGACGCCAACCGTCACCGGAAAAAGTCATATTGAAATGCTGGAGGATGCCGCTGAC
CTGACGTTTCGTTTTTACCTGAAATGTCCGCATTGTGGCGAGGAGCAGGTCCTGGTATTTGGTTTCGACGGCATCGAATA
TGGCCTCAAATGGGATAATAGCCTGCAGACAAATGAGGCGAAATCGTCGTCCGCGTATTACCAGTGCTGCCACTGTCCTG
AGCATTTTTACTATCGCGATCTCGAAAAAATGGAGCTCGCGGGGCGCTGGATAGCAGAGGACTGCACCTGGACGCGGGAC
GGTATTCGTTTTTTTGATCACGACGGTGGTGTCGTTCGCGCGCCGAAACACGCGGCGATCGTGATAAACGCCATGTATTC
GCTGAATCTCGACGGCTGGGGCGAGATTGTCAGCGAGTGGCTGAAAGCGAAGGGCGATCCGCTCAAAGAAAAGACGTTTC
ATAACACGACGCTCGGCGAACTCTGGAGTGACGTAGCCAGCGAGCAGCTGGAGCACGATATTCTGGTTAATCGCCGGGAA
AAATACGCCAGCCAGGTTCCTGACGGTGTTGTTTATCTGACCGGCGGCATCGACTCTCAGACGTCCGGTCGCTACGAGTG
TTACGTGTGGGGCTGGGGAGTGGAGGAGGAGTGCTGGCTGATTGATAAAACAATCGTCCTCGGTCGCTACGACGAGGAGG
ACACGCTGCAGCGCGTCGACGGAGTGATTCGCAAACAATACCGGCGCAGCGACGGGACCACAATCGGCGTCAGTCGCTGG
GCGTGGGATACCGGTGGTATAGATGCGCAGGTCGTTTATAACCGCTCGCTGAAACTCGGTCCGCTGTGGGTCATTCCAAT
TAAAGGTGCGAGTTCATACGGTCAGCCAGTCGTAAATATGCCGCGTACACGTAACGCGAATAAAGTCTATTTGTCGTTAA
TCGGTACTGATACGGCAAAAGATTTGCTCGCAATGCGCCTGCCGCTGGAACCCGATTCTAAATCGGCGACACCAAGTGCG
ATTCATTTTCCCAACGACGACGAAATATTCGGCACGACAGAGGCAAAACAGCTCGTCTCTGAAGTTCTGATCCCGAAACT
GATTAACGGTCGCGTCGTTTATCGCTGGGACAACCAGGGCCGGCGAAATGAGGCGCTCGACTGCTGGGTATACGCGCTGG
CAGCGCTACGTATCAGTAAAATTCGTTTCCAGCTCAATCTCGAGACGCTCGCTGAGCAACGGAAAAAATCACAAAACAAA
CTGTCTCTCGAGGAGATGGCCAGAATGCTCGGAGGGAGCTCATGA

Upstream 100 bases:

>100_bases
ACCCGTGTCGAATCGTGGCCACCACGGTTGAAAAAGGTGTGGCCTGAAATGCCGCAGGAGGCGAGCAGTGTTTTACGAGA
GGAGCTGGCGATAGCCCTGA

Downstream 100 bases:

>100_bases
TGTCGCGCGAGGTTTTAACAGAACGGCTGCTGGAAGCTGAAATTGCCCTGCACAAATTATTAACGGGTAGATCGACTGTA
TCGCTGTCTCACGGCGATTC

Product: phage terminase large subunit (GpA)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MNWQTYESTSAITMSAISNAISTGLNPLRVTIPMTGVEWADKYFYLPEGSSHIAGHWTTQPVQVVMLNMMTNDAIKIVSV
RKSARLGYTKILVAALLYFAEHKKRSAVVYQPIDDESDGFVADEVDPAIAEMPVIQKIFPDWDKSNERNNLQRKEMSGAI
IDFRGASAPGNFRRLTKQVVEGDEVDGWPLEVAKKGKGEGSPIELALVRIKGAAYPKAIFGSTPTVTGKSHIEMLEDAAD
LTFRFYLKCPHCGEEQVLVFGFDGIEYGLKWDNSLQTNEAKSSSAYYQCCHCPEHFYYRDLEKMELAGRWIAEDCTWTRD
GIRFFDHDGGVVRAPKHAAIVINAMYSLNLDGWGEIVSEWLKAKGDPLKEKTFHNTTLGELWSDVASEQLEHDILVNRRE
KYASQVPDGVVYLTGGIDSQTSGRYECYVWGWGVEEECWLIDKTIVLGRYDEEDTLQRVDGVIRKQYRRSDGTTIGVSRW
AWDTGGIDAQVVYNRSLKLGPLWVIPIKGASSYGQPVVNMPRTRNANKVYLSLIGTDTAKDLLAMRLPLEPDSKSATPSA
IHFPNDDEIFGTTEAKQLVSEVLIPKLINGRVVYRWDNQGRRNEALDCWVYALAALRISKIRFQLNLETLAEQRKKSQNK
LSLEEMARMLGGSS

Sequences:

>Translated_654_residues
MNWQTYESTSAITMSAISNAISTGLNPLRVTIPMTGVEWADKYFYLPEGSSHIAGHWTTQPVQVVMLNMMTNDAIKIVSV
RKSARLGYTKILVAALLYFAEHKKRSAVVYQPIDDESDGFVADEVDPAIAEMPVIQKIFPDWDKSNERNNLQRKEMSGAI
IDFRGASAPGNFRRLTKQVVEGDEVDGWPLEVAKKGKGEGSPIELALVRIKGAAYPKAIFGSTPTVTGKSHIEMLEDAAD
LTFRFYLKCPHCGEEQVLVFGFDGIEYGLKWDNSLQTNEAKSSSAYYQCCHCPEHFYYRDLEKMELAGRWIAEDCTWTRD
GIRFFDHDGGVVRAPKHAAIVINAMYSLNLDGWGEIVSEWLKAKGDPLKEKTFHNTTLGELWSDVASEQLEHDILVNRRE
KYASQVPDGVVYLTGGIDSQTSGRYECYVWGWGVEEECWLIDKTIVLGRYDEEDTLQRVDGVIRKQYRRSDGTTIGVSRW
AWDTGGIDAQVVYNRSLKLGPLWVIPIKGASSYGQPVVNMPRTRNANKVYLSLIGTDTAKDLLAMRLPLEPDSKSATPSA
IHFPNDDEIFGTTEAKQLVSEVLIPKLINGRVVYRWDNQGRRNEALDCWVYALAALRISKIRFQLNLETLAEQRKKSQNK
LSLEEMARMLGGSS
>Mature_654_residues
MNWQTYESTSAITMSAISNAISTGLNPLRVTIPMTGVEWADKYFYLPEGSSHIAGHWTTQPVQVVMLNMMTNDAIKIVSV
RKSARLGYTKILVAALLYFAEHKKRSAVVYQPIDDESDGFVADEVDPAIAEMPVIQKIFPDWDKSNERNNLQRKEMSGAI
IDFRGASAPGNFRRLTKQVVEGDEVDGWPLEVAKKGKGEGSPIELALVRIKGAAYPKAIFGSTPTVTGKSHIEMLEDAAD
LTFRFYLKCPHCGEEQVLVFGFDGIEYGLKWDNSLQTNEAKSSSAYYQCCHCPEHFYYRDLEKMELAGRWIAEDCTWTRD
GIRFFDHDGGVVRAPKHAAIVINAMYSLNLDGWGEIVSEWLKAKGDPLKEKTFHNTTLGELWSDVASEQLEHDILVNRRE
KYASQVPDGVVYLTGGIDSQTSGRYECYVWGWGVEEECWLIDKTIVLGRYDEEDTLQRVDGVIRKQYRRSDGTTIGVSRW
AWDTGGIDAQVVYNRSLKLGPLWVIPIKGASSYGQPVVNMPRTRNANKVYLSLIGTDTAKDLLAMRLPLEPDSKSATPSA
IHFPNDDEIFGTTEAKQLVSEVLIPKLINGRVVYRWDNQGRRNEALDCWVYALAALRISKIRFQLNLETLAEQRKKSQNK
LSLEEMARMLGGSS

Specific function: Unknown

COG id: COG5525

COG function: function code R; Bacteriophage tail assembly protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To phage lambda terminase large subunit in the N- terminal section [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458
- InterPro:   IPR008866 [H]

Pfam domain/function: PF02413 Caudo_TAP; PF05876 Terminase_GpA [H]

EC number: NA

Molecular weight: Translated: 73542; Mature: 73542

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWQTYESTSAITMSAISNAISTGLNPLRVTIPMTGVEWADKYFYLPEGSSHIAGHWTTQ
CCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
PVQVVMLNMMTNDAIKIVSVRKSARLGYTKILVAALLYFAEHKKRSAVVYQPIDDESDGF
CHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
VADEVDPAIAEMPVIQKIFPDWDKSNERNNLQRKEMSGAIIDFRGASAPGNFRRLTKQVV
ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHH
EGDEVDGWPLEVAKKGKGEGSPIELALVRIKGAAYPKAIFGSTPTVTGKSHIEMLEDAAD
CCCCCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHC
LTFRFYLKCPHCGEEQVLVFGFDGIEYGLKWDNSLQTNEAKSSSAYYQCCHCPEHFYYRD
CEEEEEEECCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
LEKMELAGRWIAEDCTWTRDGIRFFDHDGGVVRAPKHAAIVINAMYSLNLDGWGEIVSEW
HHHHHHCCCCHHCCCCCCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCHHHHHHHH
LKAKGDPLKEKTFHNTTLGELWSDVASEQLEHDILVNRREKYASQVPDGVVYLTGGIDSQ
HHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
TSGRYECYVWGWGVEEECWLIDKTIVLGRYDEEDTLQRVDGVIRKQYRRSDGTTIGVSRW
CCCCEEEEEEECCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AWDTGGIDAQVVYNRSLKLGPLWVIPIKGASSYGQPVVNMPRTRNANKVYLSLIGTDTAK
ECCCCCCCEEEEEECCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH
DLLAMRLPLEPDSKSATPSAIHFPNDDEIFGTTEAKQLVSEVLIPKLINGRVVYRWDNQG
HHHHEECCCCCCCCCCCCCEEECCCCCCEECCHHHHHHHHHHHHHHHHCCEEEEEECCCC
RRNEALDCWVYALAALRISKIRFQLNLETLAEQRKKSQNKLSLEEMARMLGGSS
CCCHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNWQTYESTSAITMSAISNAISTGLNPLRVTIPMTGVEWADKYFYLPEGSSHIAGHWTTQ
CCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
PVQVVMLNMMTNDAIKIVSVRKSARLGYTKILVAALLYFAEHKKRSAVVYQPIDDESDGF
CHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
VADEVDPAIAEMPVIQKIFPDWDKSNERNNLQRKEMSGAIIDFRGASAPGNFRRLTKQVV
ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHH
EGDEVDGWPLEVAKKGKGEGSPIELALVRIKGAAYPKAIFGSTPTVTGKSHIEMLEDAAD
CCCCCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHC
LTFRFYLKCPHCGEEQVLVFGFDGIEYGLKWDNSLQTNEAKSSSAYYQCCHCPEHFYYRD
CEEEEEEECCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
LEKMELAGRWIAEDCTWTRDGIRFFDHDGGVVRAPKHAAIVINAMYSLNLDGWGEIVSEW
HHHHHHCCCCHHCCCCCCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCHHHHHHHH
LKAKGDPLKEKTFHNTTLGELWSDVASEQLEHDILVNRREKYASQVPDGVVYLTGGIDSQ
HHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
TSGRYECYVWGWGVEEECWLIDKTIVLGRYDEEDTLQRVDGVIRKQYRRSDGTTIGVSRW
CCCCEEEEEEECCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AWDTGGIDAQVVYNRSLKLGPLWVIPIKGASSYGQPVVNMPRTRNANKVYLSLIGTDTAK
ECCCCCCCEEEEEECCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH
DLLAMRLPLEPDSKSATPSAIHFPNDDEIFGTTEAKQLVSEVLIPKLINGRVVYRWDNQG
HHHHEECCCCCCCCCCCCCEEECCCCCCEECCHHHHHHHHHHHHHHHHCCEEEEEECCCC
RRNEALDCWVYALAALRISKIRFQLNLETLAEQRKKSQNKLSLEEMARMLGGSS
CCCHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]