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The map label for this gene is tfe

Identifier: 156937912

GI number: 156937912

Start: 1003811

End: 1004332

Strand: Direct

Name: tfe

Synonym: Igni_1124

Alternate gene names: 156937912

Gene position: 1003811-1004332 (Clockwise)

Preceding gene: 156937911

Following gene: 156937913

Centisome position: 77.36

GC content: 54.21

Gene sequence:

>522_bases
TTGGCGAAGAAGGACCCTCTGGAGGAGCTCCTGGAGTTCGTGCGGAGCGTGGCCGGGGAGGACGGGGTGAGGGTGTTCAA
GGAGCTGATGAGGTACGAGGACATAAGCGAGGAGCAACTGACCGAGACCTTGGGGATGAAACCTAACGACGTAAGGAGGG
CGCTCTACAAGCTGGAGAGGTACGGGCTGGTAAGGAACTACAAGATAAGGAACGAGAACGACGGGACGTACATATACTAT
TGGTATGTAGACCGGGAAACCCTCAACAGGAACTTGCTTAAGATAAAGAAGAGCGTCCTAGAAAAGTTGAAGAGGAGGCT
GGAGAGCGAAGAAGACCAATACTTCTACTGCCCCGCGTGCGGGCTCCAGTTCTCCTACGAAGAGGCCATGGGCTACGACT
TCACTTGTCCTAGATGCGGGGAGCCCCTAGAGCTGGCCGAGAGCAACCCTAGGAAGAAACTCCTCGAGAAGATAGTCAAG
CGCCTCGAGGAGGAAATAAAGCATGAGGAGAGCGTTCTTTGA

Upstream 100 bases:

>100_bases
TTCCTAGACAGGCTTTACGGGGGCGCGGAACTTTATAGGCAGCCCGTCGGCGGCAAGCTTAGGATAATTCCGACCGAAAA
GGGGAAGAAGGTGGTCAAGG

Downstream 100 bases:

>100_bases
CCTCTTCTCCGGGGCAGGGGGCTTCGCCTTAGGCTTTGAAATGGCCGGCTTTGAAGGGGTCTTGGGGGTGGACAACGACA
AGGCGCCGGCGAGGAGCTAC

Product: transcription factor TFIIE, alpha subunit

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAKKDPLEELLEFVRSVAGEDGVRVFKELMRYEDISEEQLTETLGMKPNDVRRALYKLERYGLVRNYKIRNENDGTYIYY
WYVDRETLNRNLLKIKKSVLEKLKRRLESEEDQYFYCPACGLQFSYEEAMGYDFTCPRCGEPLELAESNPRKKLLEKIVK
RLEEEIKHEESVL

Sequences:

>Translated_173_residues
MAKKDPLEELLEFVRSVAGEDGVRVFKELMRYEDISEEQLTETLGMKPNDVRRALYKLERYGLVRNYKIRNENDGTYIYY
WYVDRETLNRNLLKIKKSVLEKLKRRLESEEDQYFYCPACGLQFSYEEAMGYDFTCPRCGEPLELAESNPRKKLLEKIVK
RLEEEIKHEESVL
>Mature_172_residues
AKKDPLEELLEFVRSVAGEDGVRVFKELMRYEDISEEQLTETLGMKPNDVRRALYKLERYGLVRNYKIRNENDGTYIYYW
YVDRETLNRNLLKIKKSVLEKLKRRLESEEDQYFYCPACGLQFSYEEAMGYDFTCPRCGEPLELAESNPRKKLLEKIVKR
LEEEIKHEESVL

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TFE_IGNH4 (A8ABJ9)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435708.1
- ProteinModelPortal:   A8ABJ9
- SMR:   A8ABJ9
- STRING:   A8ABJ9
- GeneID:   5562620
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1124
- eggNOG:   arNOG08263
- HOGENOM:   HBG508653
- OMA:   LFILYEN
- BioCyc:   IHOS453591:IGNI_1124-MONOMER
- HAMAP:   MF_01909
- InterPro:   IPR004039
- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991
- Gene3D:   G3DSA:2.20.28.10
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20697; Mature: 20566

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS51344 HTH_TFE_IIE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKDPLEELLEFVRSVAGEDGVRVFKELMRYEDISEEQLTETLGMKPNDVRRALYKLER
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
YGLVRNYKIRNENDGTYIYYWYVDRETLNRNLLKIKKSVLEKLKRRLESEEDQYFYCPAC
HCHHHCCEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
GLQFSYEEAMGYDFTCPRCGEPLELAESNPRKKLLEKIVKRLEEEIKHEESVL
CCCCCHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKKDPLEELLEFVRSVAGEDGVRVFKELMRYEDISEEQLTETLGMKPNDVRRALYKLER
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
YGLVRNYKIRNENDGTYIYYWYVDRETLNRNLLKIKKSVLEKLKRRLESEEDQYFYCPAC
HCHHHCCEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
GLQFSYEEAMGYDFTCPRCGEPLELAESNPRKKLLEKIVKRLEEEIKHEESVL
CCCCCHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA