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The map label for this gene is 156937911

Identifier: 156937911

GI number: 156937911

Start: 1003300

End: 1003956

Strand: Direct

Name: 156937911

Synonym: Igni_1123

Alternate gene names: NA

Gene position: 1003300-1003956 (Clockwise)

Preceding gene: 156937910

Following gene: 156937912

Centisome position: 77.32

GC content: 59.21

Gene sequence:

>657_bases
TTGAAGGTCTACGTCCTAAGGATAGGCCACCGCCCGGACAGGGACAAGAGGATAACAACCCACGTGGGCCTGGTCGCCCG
CGCCTTCGGCGCCCACGGCTTCGTGCTCTCCCCGTGCGACGAGAAAGTTCTGGAGAAGCTGAGGGACGTGGAGGAGAGGT
GGGGGAGGCTGTTAGAGGAGATAGCTTGTACGAACTCCCCCCTCAAGTACGTCAAGACTTGGGACGGCACGGTAGTACAC
CTAACCATGTACGGCCTCCCCGTGGACTCGGTAATTGACGAGATAAGGCAGAAGGACAAGATACTGGTGATCGTGGGGGC
AGAAAAGGTCCCCAGGGAGTACTACGAGCTCGCGCACTACAACGTCGCGATAGGCAACCAGCCGCACTCCGAAGTGGCCG
CCCTGGCGATATTCCTAGACAGGCTTTACGGGGGCGCGGAACTTTATAGGCAGCCCGTCGGCGGCAAGCTTAGGATAATT
CCGACCGAAAAGGGGAAGAAGGTGGTCAAGGTTGGCGAAGAAGGACCCTCTGGAGGAGCTCCTGGAGTTCGTGCGGAGCG
TGGCCGGGGAGGACGGGGTGAGGGTGTTCAAGGAGCTGATGAGGTACGAGGACATAAGCGAGGAGCAACTGACCGAGACC
TTGGGGATGAAACCTAA

Upstream 100 bases:

>100_bases
TAGAGAGGGAGGGGAGGGAGGTGAAGTCCGAACTGTTGAGCTCCGTTATGGACATCAAAGATTTACTCAGCGAACAGCTG
GAGTACGCGGAGGAAGTGCT

Downstream 100 bases:

>100_bases
CGACGTAAGGAGGGCGCTCTACAAGCTGGAGAGGTACGGGCTGGTAAGGAACTACAAGATAAGGAACGAGAACGACGGGA
CGTACATATACTATTGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKVYVLRIGHRPDRDKRITTHVGLVARAFGAHGFVLSPCDEKVLEKLRDVEERWGRLLEEIACTNSPLKYVKTWDGTVVH
LTMYGLPVDSVIDEIRQKDKILVIVGAEKVPREYYELAHYNVAIGNQPHSEVAALAIFLDRLYGGAELYRQPVGGKLRII
PTEKGKKVVKVGEEGPSGGAPGVRAERGRGGRGEGVQGADEVRGHKRGATDRDLGDET

Sequences:

>Translated_218_residues
MKVYVLRIGHRPDRDKRITTHVGLVARAFGAHGFVLSPCDEKVLEKLRDVEERWGRLLEEIACTNSPLKYVKTWDGTVVH
LTMYGLPVDSVIDEIRQKDKILVIVGAEKVPREYYELAHYNVAIGNQPHSEVAALAIFLDRLYGGAELYRQPVGGKLRII
PTEKGKKVVKVGEEGPSGGAPGVRAERGRGGRGEGVQGADEVRGHKRGATDRDLGDET
>Mature_218_residues
MKVYVLRIGHRPDRDKRITTHVGLVARAFGAHGFVLSPCDEKVLEKLRDVEERWGRLLEEIACTNSPLKYVKTWDGTVVH
LTMYGLPVDSVIDEIRQKDKILVIVGAEKVPREYYELAHYNVAIGNQPHSEVAALAIFLDRLYGGAELYRQPVGGKLRII
PTEKGKKVVKVGEEGPSGGAPGVRAERGRGGRGEGVQGADEVRGHKRGATDRDLGDET

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRM56_IGNH4 (A8ABJ8)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435707.1
- ProteinModelPortal:   A8ABJ8
- SMR:   A8ABJ8
- STRING:   A8ABJ8
- GeneID:   5561777
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1123
- eggNOG:   arNOG09032
- HOGENOM:   HBG297370
- OMA:   GHRPERD
- BioCyc:   IHOS453591:IGNI_1123-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00077
- InterPro:   IPR002845
- PIRSF:   PIRSF016123
- ProDom:   PD016584

Pfam domain/function: PF01994 DUF127

EC number: NA

Molecular weight: Translated: 24058; Mature: 24058

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: BINDING 81-81

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYVLRIGHRPDRDKRITTHVGLVARAFGAHGFVLSPCDEKVLEKLRDVEERWGRLLEE
CEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
IACTNSPLKYVKTWDGTVVHLTMYGLPVDSVIDEIRQKDKILVIVGAEKVPREYYELAHY
HHHCCCCHHEEEECCCEEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHC
NVAIGNQPHSEVAALAIFLDRLYGGAELYRQPVGGKLRIIPTEKGKKVVKVGEEGPSGGA
EEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCC
PGVRAERGRGGRGEGVQGADEVRGHKRGATDRDLGDET
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVYVLRIGHRPDRDKRITTHVGLVARAFGAHGFVLSPCDEKVLEKLRDVEERWGRLLEE
CEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
IACTNSPLKYVKTWDGTVVHLTMYGLPVDSVIDEIRQKDKILVIVGAEKVPREYYELAHY
HHHCCCCHHEEEECCCEEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHC
NVAIGNQPHSEVAALAIFLDRLYGGAELYRQPVGGKLRIIPTEKGKKVVKVGEEGPSGGA
EEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCC
PGVRAERGRGGRGEGVQGADEVRGHKRGATDRDLGDET
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA