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The map label for this gene is rpl7ae

Identifier: 156937025

GI number: 156937025

Start: 201840

End: 202226

Strand: Reverse

Name: rpl7ae

Synonym: Igni_0230

Alternate gene names: 156937025

Gene position: 202226-201840 (Counterclockwise)

Preceding gene: 156937026

Following gene: 156937024

Centisome position: 15.59

GC content: 57.88

Gene sequence:

>387_bases
ATGAGCAAGCCGTTCTACGTTAGGTTTGAAGTGCCCCCCGAGTTGGCCGAGAAGGCTTACGAGGCTTTGAGGAAGGCCAG
AGAGAGCGGCGGGAAGATAAAGAAGGGTACTAACGAAACTACCAAGGCCGTCGACAAGGGCCTCGCGAAGCTGGTGCTGA
TCGCGGAGGACGTGGACCCCCCAGAGATAGTGGCGCACTTGCCCTTGCTCTGTGAAGAGAAGAAGATACCTTACGTCTAC
GTGCCCAGCAAGAAGAAGCTCGGGGAGGCTGCCGGCATAGAGGTGCAAGCCGCTGCCGCCGCCATAATAGACCCCGGCGC
GGCCAAGGACTTGGTAGAAGAGATAATCAAGGAGGTAGAGCAGATAAAGGCCAAGGCCGGGCTCTGA

Upstream 100 bases:

>100_bases
CTTTCAGCGCTCAGCTTGCTCCTCATCGGCGCCGCGGGCCTCCCTTCACTCTTTTTTAACCTCCCTCCCTCGTGCCCCTC
ACGACGAGGGGTAGATGAGG

Downstream 100 bases:

>100_bases
TGTCGGAGTTCGAAGTAATTGAGGAGTTTTTGTCGATTCAAGGCGAGGGCAGCTTGGTGGGGACGCCCGCCTACTTCGTG
AGGCTCGCGAGGTGTAACTT

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSKPFYVRFEVPPELAEKAYEALRKARESGGKIKKGTNETTKAVDKGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVY
VPSKKKLGEAAGIEVQAAAAAIIDPGAAKDLVEEIIKEVEQIKAKAGL

Sequences:

>Translated_128_residues
MSKPFYVRFEVPPELAEKAYEALRKARESGGKIKKGTNETTKAVDKGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVY
VPSKKKLGEAAGIEVQAAAAAIIDPGAAKDLVEEIIKEVEQIKAKAGL
>Mature_127_residues
SKPFYVRFEVPPELAEKAYEALRKARESGGKIKKGTNETTKAVDKGLAKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVYV
PSKKKLGEAAGIEVQAAAAAIIDPGAAKDLVEEIIKEVEQIKAKAGL

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family

Homologues:

Organism=Homo sapiens, GI4826860, Length=71, Percent_Identity=43.6619718309859, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI51317376, Length=71, Percent_Identity=43.6619718309859, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI8923444, Length=108, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17555988, Length=112, Percent_Identity=29.4642857142857, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32565833, Length=130, Percent_Identity=34.6153846153846, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17535189, Length=111, Percent_Identity=36.9369369369369, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI32565827, Length=87, Percent_Identity=39.0804597701149, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6320809, Length=77, Percent_Identity=45.4545454545455, Blast_Score=83, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319993, Length=121, Percent_Identity=33.0578512396694, Blast_Score=74, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17864298, Length=111, Percent_Identity=37.8378378378378, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21356151, Length=109, Percent_Identity=33.9449541284404, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL7A_IGNH4 (A8A912)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001434821.1
- ProteinModelPortal:   A8A912
- SMR:   A8A912
- STRING:   A8A912
- GeneID:   5562059
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0230
- eggNOG:   arNOG10239
- HOGENOM:   HBG739027
- OMA:   GTNEATK
- ProtClustDB:   PRK04175
- BioCyc:   IHOS453591:IGNI_0230-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00326
- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR004037
- InterPro:   IPR000948
- PRINTS:   PR00881
- PRINTS:   PR00884
- TIGRFAMs:   TIGR03677

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 13836; Mature: 13705

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPFYVRFEVPPELAEKAYEALRKARESGGKIKKGTNETTKAVDKGLAKLVLIAEDVDP
CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
PEIVAHLPLLCEEKKIPYVYVPSKKKLGEAAGIEVQAAAAAIIDPGAAKDLVEEIIKEVE
HHHHHHCCHHCCCCCCCEEECCCHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
QIKAKAGL
HHHHHCCC
>Mature Secondary Structure 
SKPFYVRFEVPPELAEKAYEALRKARESGGKIKKGTNETTKAVDKGLAKLVLIAEDVDP
CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
PEIVAHLPLLCEEKKIPYVYVPSKKKLGEAAGIEVQAAAAAIIDPGAAKDLVEEIIKEVE
HHHHHHCCHHCCCCCCCEEECCCHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
QIKAKAGL
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA