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The map label for this gene is ygcF [C]

Identifier: 156937024

GI number: 156937024

Start: 201184

End: 201840

Strand: Reverse

Name: ygcF [C]

Synonym: Igni_0229

Alternate gene names: 156937024

Gene position: 201840-201184 (Counterclockwise)

Preceding gene: 156937025

Following gene: 156937022

Centisome position: 15.56

GC content: 56.16

Gene sequence:

>657_bases
ATGTCGGAGTTCGAAGTAATTGAGGAGTTTTTGTCGATTCAAGGCGAGGGCAGCTTGGTGGGGACGCCCGCCTACTTCGT
GAGGCTCGCGAGGTGTAACTTGCGCTGCCCTTGGTGCGACACGAAGTACTCTTGGTCCCCAGGACTCAAGGTCCCCGTGA
GCGAGGTAGCGGAGAGGGCCCTCGAGAGCGGCGTGGGCCTCATAGTGTTAACCGGCGGAGAGCCCCTGTTGTGGCAACTG
GAGATAAGGAGCTTTTTGAAAGAGCTCGAAGAGAAGGGGTTCAAAGGGCTCGTCCAAATAGAGACCAACGGCACGATCTA
CCCCAGCGCCCTGGAAGGACACGAAATCTGGATTACTGTAAGCCCCAAAGTTACTTGCGATTACTACATAAACTTCCCGT
CAACAGTCAGGAGGATATTGGAGAACTTCTCGGGGGAACTGAAGTTAGTGGTGCGGAGGACAGACCTAACGTGTGTAAAG
AAGTTCCTCGAAGAGCTCGGAGACGTCCCGAGGCCCGTGGTCCTCCAACCCTTGGACGAGGGCGAGGGTTACGCGTCCGC
CGCGAGGGAGCTCGTCCTCGAGGTGTTGAAGGACGACTACCTAAAAAGGAGGGTGAGGGTAGTACCCCAAGTCCACAAGC
TCCTCCAAATGCCCTAA

Upstream 100 bases:

>100_bases
AAGCCGCTGCCGCCGCCATAATAGACCCCGGCGCGGCCAAGGACTTGGTAGAAGAGATAATCAAGGAGGTAGAGCAGATA
AAGGCCAAGGCCGGGCTCTG

Downstream 100 bases:

>100_bases
CCCACGCTGAAAGTACAGCTCTCGCAGACCGCCTCGATCACCCCTACAGCTGACACCGCCCCGTTGCCCTTCTGGATCCA
CGAAACTATGTCGTCGAAGG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNLRCPWCDTKYSWSPGLKVPVSEVAERALESGVGLIVLTGGEPLLWQL
EIRSFLKELEEKGFKGLVQIETNGTIYPSALEGHEIWITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVK
KFLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLLQMP

Sequences:

>Translated_218_residues
MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNLRCPWCDTKYSWSPGLKVPVSEVAERALESGVGLIVLTGGEPLLWQL
EIRSFLKELEEKGFKGLVQIETNGTIYPSALEGHEIWITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVK
KFLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLLQMP
>Mature_217_residues
SEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNLRCPWCDTKYSWSPGLKVPVSEVAERALESGVGLIVLTGGEPLLWQLE
IRSFLKELEEKGFKGLVQIETNGTIYPSALEGHEIWITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVKK
FLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLLQMP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=246, Percent_Identity=29.6747967479675, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24669; Mature: 24538

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNLRCPWCDTKYSWSPGLKVPVSEVAERA
CCHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LESGVGLIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQIETNGTIYPSALEGHEIWITV
HHCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCEEEEEE
SPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVKKFLEELGDVPRPVVLQPLDE
CCCEEEEEEECCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCC
GEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLLQMP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNLRCPWCDTKYSWSPGLKVPVSEVAERA
CHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LESGVGLIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQIETNGTIYPSALEGHEIWITV
HHCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCEEEEEE
SPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVKKFLEELGDVPRPVVLQPLDE
CCCEEEEEEECCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCC
GEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLLQMP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]