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The map label for this gene is pdxS [H]

Identifier: 156936951

GI number: 156936951

Start: 141177

End: 142205

Strand: Reverse

Name: pdxS [H]

Synonym: Igni_0156

Alternate gene names: 156936951

Gene position: 142205-141177 (Counterclockwise)

Preceding gene: 156936954

Following gene: 156936950

Centisome position: 10.96

GC content: 57.05

Gene sequence:

>1029_bases
TTGAGGCACAGGGACGGATTAGTAGAAGTTGGTTTTGACGCTATAGCCAACTTCTTCTACAAGCTCGCGGAGACTGCCGA
CAAGCTGAAGGAGGAAGGCTTGTGGACTTACTTGCCCGACCCCCGTGAAGTGGAACGAGAGGTAGCCAAAGGGACCGTCC
GCGCGAAGCTCGGCTTCCCGGTGTATCAGAAGGGCGGCGTTATCATGGACGTTACCAACATAGAGCAAGCCGAAATAGCG
GAGGACGCGGGGGCCGTCGCGGTAATGGTGCTGGACAAGCTTCCCTACGACATAAGGAAGAGCGGCGGCGTCGCCAGGAT
GGCGGACGTAAACGTAATCAGAGAAGTTATGGATTCTATCTCCCTCCCAGTTATGGCCAAGGTTAGGATAGGGCACTTCA
TGGAGGCGAAGGTACTGGAAGCGCTGGGCGTAGACATGATAGACGAGAGCGAAGTACTGACGCCGGCGGACGAGAAACAC
CACATAAATAAGTGGCTGTTTAAAGTACCCTTCGTCAACGGCGCTAGGAACTTGGGAGAGGCGCTCAGGAGGATCAGCGA
GGGCGCGTCAATGATAAGGACTAAGGGAGAGGCGGGGACCGGCAACGTGGTGGAGGCAGTAAAGCACATGAAGACTGTTA
TGGGAGAGATTAGGGAAATAGTCTCCATGAGCGAGGAGGATAGGGTCCTAAAGGCCAGAGAGATGGGCGTGAGTTACGAG
CTCGTGGAGCTCGTCGCTAGGCTTAGGAGGCTACCGGTGGTCAACTTCGCCGCCGGGGGCATCGCCACCCCAGCGGACGC
CGCACTCATGATGTGGCTGGGCGCCGACGGAGTGTTCGTAGGCTCCGGGATCTTCAAGAGCGAGGACCCCCGCCAGAGGG
CTGAAGCGATAGTCCTCGCGACGTCCCTTTGGATGGATCCCGAGGCCGTACTCGAAGCGCAGTCCATGATAAGCGAGAGG
AAGAGTATGATGGGCATTGACGTAAAACAGCTCAAGCCCGAAGAGCTGTTGCAGGTTAGGGGTGAGTGA

Upstream 100 bases:

>100_bases
TCTTTCCCGCCTTCCCATCAGAGCTCGTTAGCTTAAAGCGGTTCCATGCGCTCGAGACTTATATACGCCTCACAGGAAGG
TAGTGCCTCGGGTCGAAGGT

Downstream 100 bases:

>100_bases
GTTGAAGGTCGGCGTCTTGGCGCTTCAAGGCGGCGTGGTCGAACACATCTACATGATAAGGGAAGCCGCCAAGAGGTTGG
GCAAAGAAGTGGAAGTGGTG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRHRDGLVEVGFDAIANFFYKLAETADKLKEEGLWTYLPDPREVEREVAKGTVRAKLGFPVYQKGGVIMDVTNIEQAEIA
EDAGAVAVMVLDKLPYDIRKSGGVARMADVNVIREVMDSISLPVMAKVRIGHFMEAKVLEALGVDMIDESEVLTPADEKH
HINKWLFKVPFVNGARNLGEALRRISEGASMIRTKGEAGTGNVVEAVKHMKTVMGEIREIVSMSEEDRVLKAREMGVSYE
LVELVARLRRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSEDPRQRAEAIVLATSLWMDPEAVLEAQSMISER
KSMMGIDVKQLKPEELLQVRGE

Sequences:

>Translated_342_residues
MRHRDGLVEVGFDAIANFFYKLAETADKLKEEGLWTYLPDPREVEREVAKGTVRAKLGFPVYQKGGVIMDVTNIEQAEIA
EDAGAVAVMVLDKLPYDIRKSGGVARMADVNVIREVMDSISLPVMAKVRIGHFMEAKVLEALGVDMIDESEVLTPADEKH
HINKWLFKVPFVNGARNLGEALRRISEGASMIRTKGEAGTGNVVEAVKHMKTVMGEIREIVSMSEEDRVLKAREMGVSYE
LVELVARLRRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSEDPRQRAEAIVLATSLWMDPEAVLEAQSMISER
KSMMGIDVKQLKPEELLQVRGE
>Mature_342_residues
MRHRDGLVEVGFDAIANFFYKLAETADKLKEEGLWTYLPDPREVEREVAKGTVRAKLGFPVYQKGGVIMDVTNIEQAEIA
EDAGAVAVMVLDKLPYDIRKSGGVARMADVNVIREVMDSISLPVMAKVRIGHFMEAKVLEALGVDMIDESEVLTPADEKH
HINKWLFKVPFVNGARNLGEALRRISEGASMIRTKGEAGTGNVVEAVKHMKTVMGEIREIVSMSEEDRVLKAREMGVSYE
LVELVARLRRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSEDPRQRAEAIVLATSLWMDPEAVLEAQSMISER
KSMMGIDVKQLKPEELLQVRGE

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=279, Percent_Identity=58.0645161290323, Blast_Score=309, Evalue=4e-85,
Organism=Saccharomyces cerevisiae, GI6321049, Length=281, Percent_Identity=57.2953736654804, Blast_Score=306, Evalue=4e-84,
Organism=Saccharomyces cerevisiae, GI6323996, Length=281, Percent_Identity=57.2953736654804, Blast_Score=305, Evalue=6e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 37724; Mature: 37724

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHRDGLVEVGFDAIANFFYKLAETADKLKEEGLWTYLPDPREVEREVAKGTVRAKLGFP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCHHEEEECCC
VYQKGGVIMDVTNIEQAEIAEDAGAVAVMVLDKLPYDIRKSGGVARMADVNVIREVMDSI
EEECCCEEEEECCCCHHHHHHHCCCEEEEHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHC
SLPVMAKVRIGHFMEAKVLEALGVDMIDESEVLTPADEKHHINKWLFKVPFVNGARNLGE
CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
ALRRISEGASMIRTKGEAGTGNVVEAVKHMKTVMGEIREIVSMSEEDRVLKAREMGVSYE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
LVELVARLRRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSEDPRQRAEAIVLA
HHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH
TSLWMDPEAVLEAQSMISERKSMMGIDVKQLKPEELLQVRGE
HHHHCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCC
>Mature Secondary Structure
MRHRDGLVEVGFDAIANFFYKLAETADKLKEEGLWTYLPDPREVEREVAKGTVRAKLGFP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCHHEEEECCC
VYQKGGVIMDVTNIEQAEIAEDAGAVAVMVLDKLPYDIRKSGGVARMADVNVIREVMDSI
EEECCCEEEEECCCCHHHHHHHCCCEEEEHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHC
SLPVMAKVRIGHFMEAKVLEALGVDMIDESEVLTPADEKHHINKWLFKVPFVNGARNLGE
CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
ALRRISEGASMIRTKGEAGTGNVVEAVKHMKTVMGEIREIVSMSEEDRVLKAREMGVSYE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
LVELVARLRRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSEDPRQRAEAIVLA
HHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH
TSLWMDPEAVLEAQSMISERKSMMGIDVKQLKPEELLQVRGE
HHHHCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]