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The map label for this gene is ydiC [H]

Identifier: 15675693

GI number: 15675693

Start: 1554913

End: 1555611

Strand: Reverse

Name: ydiC [H]

Synonym: SPy_1874

Alternate gene names: 15675693

Gene position: 1555611-1554913 (Counterclockwise)

Preceding gene: 15675696

Following gene: 15675692

Centisome position: 83.98

GC content: 39.48

Gene sequence:

>699_bases
ATGAAGACACTTGCATTTGATACCTCAAATAAAACCTTGTCCCTTGCTATACTTGATGATGAGACACTTCTAGCAGATAT
GACCCTTAACATTCAGAAAAAACATAGTGTTAGCCTTATGCCTGCTATTGATTTTTTGATGACTTGTACTGATCTTAAAC
CTCAAGATTTAGAAAGAATAGTGGTTGCAAAAGGCCCTGGATCTTACACAGGTTTACGAGTGGCAGTTGCTACTGCAAAA
ACGTTAGCGTACAGTTTAAATATTGCATTGGTCGGGATTTCGAGTCTATATGCTTTGGCTGCGTCTACTTGTAAACAGTA
TCCAAATACTTTGGTGGTGCCATTGATTGATGCTAGAAGGCAAAATGCGTATGTAGGTTATTATCGGCAAGGAAAATCAG
TGATGCCACAAGCCCATGCTTCACTAGAAGTTATTATAGAACAATTAGTAGAAGAAGGACAGCTGATTTTTGTTGGGGAG
ACTGCTCCTTTTGCTGAGAAAATTCAAAAGAAACTACCTCAGGCGATACTACTTCCAACCCTTCCTTCTGCTTACGAATG
TGGTCTTTTGGGGCAAAGTTTGGCACCAGAAAATGTAGACGCCTTTGTCCCTCAATATCTCAAGAGAGTGGAAGCTGAAG
AAAACTGGCTCAAAGATAATGAGATAAAAGATGATAGTCACTACGTTAAGCGAATCTAA

Upstream 100 bases:

>100_bases
TTATGGTATAGTCTAAATCAAATTAAGAGTCAGCCTTTTTGTTTATGATTCTTAATTTGTGTTATAATTGATACTAGAAC
TTGCAGTAGAAAGGCATAAA

Downstream 100 bases:

>100_bases
TATGAAAACAGTTGAAGAACAAGCAAAAAATATTTATCAGCTTTTGGAAATGGTTTATGGCACGTCTCCTTGGACTTTAG
AACAAGTATTAATCGATATA

Product: putative glycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKKHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNAYVGYYRQGKSVMPQAHASLEVIIEQLVEEGQLIFVGE
TAPFAEKIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI

Sequences:

>Translated_232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKKHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNAYVGYYRQGKSVMPQAHASLEVIIEQLVEEGQLIFVGE
TAPFAEKIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
>Mature_232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKKHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNAYVGYYRQGKSVMPQAHASLEVIIEQLVEEGQLIFVGE
TAPFAEKIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=223, Percent_Identity=25.1121076233184, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25586; Mature: 25586

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKKHSVSLMPAIDFLMTCTDLKPQDLERI
CCEEEEECCCCEEEEEEECCCEEEEEEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCEE
VVAKGPGSYTGLRVAVATAKTLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARR
EEECCCCCCCCEEEEEHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCC
QNAYVGYYRQGKSVMPQAHASLEVIIEQLVEEGQLIFVGETAPFAEKIQKKLPQAILLPT
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCC
LPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKKHSVSLMPAIDFLMTCTDLKPQDLERI
CCEEEEECCCCEEEEEEECCCEEEEEEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCEE
VVAKGPGSYTGLRVAVATAKTLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARR
EEECCCCCCCCEEEEEHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCC
QNAYVGYYRQGKSVMPQAHASLEVIIEQLVEEGQLIFVGETAPFAEKIQKKLPQAILLPT
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCC
LPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]