Click here to switch to the map view.

The map label for this gene is dnaQ [H]

Identifier: 15675683

GI number: 15675683

Start: 1546470

End: 1547096

Strand: Reverse

Name: dnaQ [H]

Synonym: SPy_1864

Alternate gene names: 15675683

Gene position: 1547096-1546470 (Counterclockwise)

Preceding gene: 15675684

Following gene: 15675682

Centisome position: 83.52

GC content: 39.55

Gene sequence:

>627_bases
ATGACGAAGGCCCTATCAGGGTCTTTTTTGGAGGAAAACATGAAACACTTAGATACTTATATTGCCTTTGATTTAGAATT
TAACACTGTCAATGACGTTAGTCATATCATTCAAGTATCAGCAGTCAAATATGACCACCATAAAGAAGTTGACAGCTTTG
ACACCTATGTTTACACAGATGTTCCCTTACAGAGCTTTATCAATGGCCTAACAGGAATCACATCTGACAAGATTGCTGCG
GAACCAAAAGTAGAGGAGGTTATGGCTGCGTTTAAAAATTTTGTGGGAGAGTTACCACTGATTGGTTATAATGCTCAAAA
ATCTGACCTGCCTATTCTAGCTGAAAATGGCTTGGATTTAAGGGACCAATACCAGATTGACCTCTTTGATGAAGCTTACG
ATAGACGTAGCGCAGACTTAAATGGGATTGCTAACCTTCGTCTGCAAACAGTGGCAACCTTTTTAGGCATTAAGGGTCGA
GGTCATAATAGCTTAGAAGATGCCAGAATGACAGCAGTAATCTATAAGTCTTTTTTAGAAACAGATACAAACAAAGCATA
TCTCAGCCAGCAAGAAGAGGTAACCACAGATAACCCTTTCGCAGCTTTGGGAGACTTTTTCGACTAA

Upstream 100 bases:

>100_bases
AGAAGCCAACCAAGCTCGCTTACAAGTCGAAGAAGTTCAGGCTGAAGTTGGCCCTAAAAAAGGCTTTTTCACCCGCTTGT
TTGCGAAATAATCACAAAAG

Downstream 100 bases:

>100_bases
AGGCTCTGCTATTTTTGAAAAATAAAAAAATTCCTAGGGTTAGCCCTTGCTTATAACGCTAGGTCATGTAAGATAGGGGC
ATATCAAGAGGGAGTCGGGT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEVDSFDTYVYTDVPLQSFINGLTGITSDKIAA
EPKVEEVMAAFKNFVGELPLIGYNAQKSDLPILAENGLDLRDQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIKGR
GHNSLEDARMTAVIYKSFLETDTNKAYLSQQEEVTTDNPFAALGDFFD

Sequences:

>Translated_208_residues
MTKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEVDSFDTYVYTDVPLQSFINGLTGITSDKIAA
EPKVEEVMAAFKNFVGELPLIGYNAQKSDLPILAENGLDLRDQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIKGR
GHNSLEDARMTAVIYKSFLETDTNKAYLSQQEEVTTDNPFAALGDFFD
>Mature_207_residues
TKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEVDSFDTYVYTDVPLQSFINGLTGITSDKIAAE
PKVEEVMAAFKNFVGELPLIGYNAQKSDLPILAENGLDLRDQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIKGRG
HNSLEDARMTAVIYKSFLETDTNKAYLSQQEEVTTDNPFAALGDFFD

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR023223
- InterPro:   IPR016027
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 23337; Mature: 23206

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEVDSFDTYVYTD
CCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
VPLQSFINGLTGITSDKIAAEPKVEEVMAAFKNFVGELPLIGYNAQKSDLPILAENGLDL
CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEEECCCCCC
RDQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIKGRGHNSLEDARMTAVIYKSFLE
CCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
TDTNKAYLSQQEEVTTDNPFAALGDFFD
CCCCHHHHCCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
TKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEVDSFDTYVYTD
CCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
VPLQSFINGLTGITSDKIAAEPKVEEVMAAFKNFVGELPLIGYNAQKSDLPILAENGLDL
CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEEECCCCCC
RDQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIKGRGHNSLEDARMTAVIYKSFLE
CCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
TDTNKAYLSQQEEVTTDNPFAALGDFFD
CCCCHHHHCCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]